Abd-B

Information Abd-B

Description

The gene Abdominal B is referred to in FlyBase by the symbol DmelAbd-B (CG11648, FBgn0000015). It is a protein_coding_gene from Dmel. It has 10 annotated transcripts and 10 polypeptides (4 unique). Gene sequence location is 3R:16927212..16972236. Its molecular function is described by: DNA-binding transcription factor activity; transcription regulatory region sequence-specific DNA binding; RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 26 unique terms, many of which group under: nucleic acid metabolic process; organic substance biosynthetic process; imaginal disc-derived genitalia development; negative regulation of female receptivity; regulation of apoptotic process. 241 alleles are reported. The phenotypes of these alleles manifest in: embryonic abdomen; parasegment 12; larval abdominal segment 9; embryonic dorsal vessel; imaginal disc primordium. The phenotypic classes of alleles include: sterile; phenotype; cell number defective; cell death defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis.

Full Name

Abdominal B

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
6
Biotypes
2
Peaks
91,951
Non-redundant peaks
45,760

TF Classification

Familly
Homeo domain factors
Sub Familly
HOX-related factors

Source JASPAR

External IDs

NCBI Gene
47763
Official Gene Name
Abd-B
JASPAR
MA0165.1
Ensembl
FBgn0000015
UniProt
P09087
Genevisible
P09087
RefSeq
NM_206498
Aliases
Abd-B
All peaks Abd-B
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Non redundant peaks Abd-B
Download BED file
SEQUENCES Abd-B
Download FASTA file
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Datasets Table for Abd-B

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
Abd-B adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR692UBK 13,973
Abd-B adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR465HPZ 22,887
Abd-B Kc167 GEO Drosophila melanogaster GSE122574 12,876
Abd-B Kc167 GEO Drosophila melanogaster GSE69796 13,096
Abd-B Kc167 stable GEO Drosophila melanogaster GSE122573 14,135
Abd-B Kc167 Homothorax_stable GEO Drosophila melanogaster GSE122573 14,984
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks