CTCF

Information CTCF

Description

The gene CTCF is referred to in FlyBase by the symbol DmelCTCF (CG8591, FBgn0035769). It is a protein_coding_gene from Dmel. It has one annotated transcript and one polypeptide. Gene sequence location is 3L:7353578..7356713. Its molecular function is described by 7 unique terms, many of which group under: binding; DNA binding; nucleic acid binding; sequence-specific double-stranded DNA binding; transcription regulatory region sequence-specific DNA binding. It is involved in the biological process described with 6 unique terms, many of which group under: segmentation; response to stimulus; negative regulation of biosynthetic process; regionalization; response to ketone. 32 alleles are reported. The phenotypes of these alleles manifest in: visual system; I band; male organism; abdominal segment 4; supramolecular polymer. The phenotypic classes of alleles include: modifier of variegation; some die during P-stage; viable; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.

Full Name

CTCF

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
24
Biotypes
8
Peaks
123,572
Non-redundant peaks
43,672

TF Classification

Familly
C2H2 zinc finger factors
Sub Familly
More than 3 adjacent zinc finger factors

Source JASPAR

External IDs

NCBI Gene
38817
Official Gene Name
CTCF
JASPAR
MA0531.1
Ensembl
FBgn0035769
UniProt
Genevisible
RefSeq
NM_139852
Aliases
CTCF
All peaks CTCF
Download BED file
Non redundant peaks CTCF
Download BED file
SEQUENCES CTCF
Download FASTA file
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Datasets Table for CTCF

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
CTCF Kc167 3h GEO Drosophila melanogaster GSE30740 9,779
CTCF Kc167 GEO Drosophila melanogaster GSE45293 4,691
CTCF Kc167 NT GEO Drosophila melanogaster GSE62904 569
CTCF Schneider-2 500 GEO Drosophila melanogaster GSE20000 2,494
CTCF Schneider-2 200 GEO Drosophila melanogaster GSE20000 4,275
CTCF Schneider-2 ENCODE Drosophila melanogaster ENCSR918GXT 7,136
CTCF Schneider-2 induced GEO Drosophila melanogaster GSE96581 1,014
CTCF Schneider-2 ENCODE Drosophila melanogaster ENCSR711UTK 4,362
CTCF Schneider-2 control GEO Drosophila melanogaster GSE96581 1,261
CTCF adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR661BEZ 23,982
CTCF embryo GEO Drosophila melanogaster GSE85404 6,992
CTCF embryo GEO Drosophila melanogaster GSE136407 1,890
CTCF embryo 5h-13h_mixed GEO Drosophila melanogaster GSE55257 1,900
CTCF embryo 5h-13h_PS7 GEO Drosophila melanogaster GSE55257 427
CTCF Kc167 0h GEO Drosophila melanogaster GSE30740 5,752
CTCF Kc167 48h GEO Drosophila melanogaster GSE30740 10,697
CTCF Kc167 HS GEO Drosophila melanogaster GSE62904 1,258
CTCF Kc167 DPP GEO Drosophila melanogaster GSE68654 2,792
CTCF Kc interphase GEO Drosophila melanogaster GSE32584 5,822
CTCF Kc mitosis GEO Drosophila melanogaster GSE32584 3,890
CTCF S2-DRSC 3AB GEO Drosophila melanogaster GSE41354 4,617
CTCF S2-DRSC GEO Drosophila melanogaster GSE41354 9,424
CTCF third-instar eye-antennal-disc GEO Drosophila melanogaster GSE59078 3,317
CTCF prepupa white_homemade GEO Drosophila melanogaster GSE24449 5,231
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks