CTCF
Information CTCF
- Description
The gene CTCF is referred to in FlyBase by the symbol DmelCTCF (CG8591, FBgn0035769). It is a protein_coding_gene from Dmel. It has one annotated transcript and one polypeptide. Gene sequence location is 3L:7353578..7356713. Its molecular function is described by 7 unique terms, many of which group under: binding; DNA binding; nucleic acid binding; sequence-specific double-stranded DNA binding; transcription regulatory region sequence-specific DNA binding. It is involved in the biological process described with 6 unique terms, many of which group under: segmentation; response to stimulus; negative regulation of biosynthetic process; regionalization; response to ketone. 32 alleles are reported. The phenotypes of these alleles manifest in: visual system; I band; male organism; abdominal segment 4; supramolecular polymer. The phenotypic classes of alleles include: modifier of variegation; some die during P-stage; viable; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
- Full Name
CTCF
Source FlyBase
- Species
Drosophila melanogaster [tax_id: 7227]
- Genome
dm6
ReMap Statistics
- Datasets
- 24
- Biotypes
- 8
- Peaks
- 123,572
- Non-redundant peaks
- 43,672
TF Classification
- Familly
- C2H2 zinc finger factors
- Sub Familly
- More than 3 adjacent zinc finger factors
Source JASPAR
External IDs
- NCBI Gene
- 38817
- Official Gene Name
- CTCF
- JASPAR
- MA0531.1
- Ensembl
- FBgn0035769
- UniProt
- Genevisible
- RefSeq
- NM_139852
- Aliases
- CTCF
Datasets Table for CTCF
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
CTCF | Kc167 | 3h | GEO | Drosophila melanogaster | GSE30740 | 9,779 | ||
CTCF | Kc167 | GEO | Drosophila melanogaster | GSE45293 | 4,691 | |||
CTCF | Kc167 | NT | GEO | Drosophila melanogaster | GSE62904 | 569 | ||
CTCF | Schneider-2 | 500 | GEO | Drosophila melanogaster | GSE20000 | 2,494 | ||
CTCF | Schneider-2 | 200 | GEO | Drosophila melanogaster | GSE20000 | 4,275 | ||
CTCF | Schneider-2 | ENCODE | Drosophila melanogaster | ENCSR918GXT | 7,136 | |||
CTCF | Schneider-2 | induced | GEO | Drosophila melanogaster | GSE96581 | 1,014 | ||
CTCF | Schneider-2 | ENCODE | Drosophila melanogaster | ENCSR711UTK | 4,362 | |||
CTCF | Schneider-2 | control | GEO | Drosophila melanogaster | GSE96581 | 1,261 | ||
CTCF | adult | whole-fly_site-specific-recombination_insertion | ENCODE | Drosophila melanogaster | ENCSR661BEZ | 23,982 | ||
CTCF | embryo | GEO | Drosophila melanogaster | GSE85404 | 6,992 | |||
CTCF | embryo | GEO | Drosophila melanogaster | GSE136407 | 1,890 | |||
CTCF | embryo | 5h-13h_mixed | GEO | Drosophila melanogaster | GSE55257 | 1,900 | ||
CTCF | embryo | 5h-13h_PS7 | GEO | Drosophila melanogaster | GSE55257 | 427 | ||
CTCF | Kc167 | 0h | GEO | Drosophila melanogaster | GSE30740 | 5,752 | ||
CTCF | Kc167 | 48h | GEO | Drosophila melanogaster | GSE30740 | 10,697 | ||
CTCF | Kc167 | HS | GEO | Drosophila melanogaster | GSE62904 | 1,258 | ||
CTCF | Kc167 | DPP | GEO | Drosophila melanogaster | GSE68654 | 2,792 | ||
CTCF | Kc | interphase | GEO | Drosophila melanogaster | GSE32584 | 5,822 | ||
CTCF | Kc | mitosis | GEO | Drosophila melanogaster | GSE32584 | 3,890 | ||
CTCF | S2-DRSC | 3AB | GEO | Drosophila melanogaster | GSE41354 | 4,617 | ||
CTCF | S2-DRSC | GEO | Drosophila melanogaster | GSE41354 | 9,424 | |||
CTCF | third-instar | eye-antennal-disc | GEO | Drosophila melanogaster | GSE59078 | 3,317 | ||
CTCF | prepupa | white_homemade | GEO | Drosophila melanogaster | GSE24449 | 5,231 | ||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |