PAX6

Information PAX6

Description

This gene encodes paired box protein Pax-6, one of many human homologs of the Drosophila melanogaster gene prd. In addition to a conserved paired box domain, a hallmark feature of this gene family, the encoded protein also contains a homeobox domain. Both domains are known to bind DNA and function as regulators of gene transcription. Activity of this protein is key in the development of neural tissues, particularly the eye. This gene is regulated by multiple enhancers located up to hundreds of kilobases distant from this locus. Mutations in this gene or in the enhancer regions can cause ocular disorders such as aniridia and Peter's anomaly. Use of alternate promoters and alternative splicing results in multiple transcript variants encoding different isoforms. Interestingly, inclusion of a particular alternate coding exon has been shown to increase the length of the paired box domain and alter its DNA binding specificity. Consequently, isoforms that carry the shorter paired box domain regulate a different set of genes compared to the isoforms carrying the longer paired box domain. [provided by RefSeq, Mar 2019]

Full Name

paired box 6

Source NCBI

Species

Homo sapiens [tax_id: 9606]

Genome

hg38

ReMap Statistics

Datasets
2
Biotypes
2
Peaks
14,985
Non-redundant peaks
14,884

TF Classification

Super Class
Helix-turn-helix domains
Class
Paired box factors
Familly
Paired plus homeo domain
Sub Familly
PAX-4/6

Source TFClass

External IDs

NCBI Gene
5080
Official Gene Name
PAX6
JASPAR
MA0069
Ensembl
ENSG00000007372
UniProt
P26367
Genevisible
P26367
RefSeq
NM_000280
Aliases
AN; AN2; ASGD5; D11S812E; FVH1; MGDA; WAGR
All peaks PAX6
Download BED file
Non redundant peaks PAX6
Download BED file
SEQUENCES PAX6
Download FASTA file
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Datasets Table for PAX6

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
PAX6 EndoC-betaH2 GEO Homo sapiens GSE87530 5,367
PAX6 retina pigment GEO Homo sapiens GSE60024 9,618
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks