PRDM1

Information PRDM1

Description

This gene encodes a protein that acts as a repressor of beta-interferon gene expression. The protein binds specifically to the PRDI (positive regulatory domain I element) of the beta-IFN gene promoter. Transcription of this gene increases upon virus induction. Two alternatively spliced transcript variants that encode different isoforms have been reported. [provided by RefSeq, Jul 2008]

Full Name

PR/SET domain 1

Source NCBI

Species

Homo sapiens [tax_id: 9606]

Genome

hg38

ReMap Statistics

Datasets
7
Biotypes
6
Peaks
119,655
Non-redundant peaks
111,413

TF Classification

Super Class
Zinc-coordinating DNA-binding domains
Class
C2H2 zinc finger factors
Familly
More than 3 adjacent zinc finger factors
Sub Familly
PRDM1-like factors

Source TFClass

External IDs

NCBI Gene
639
Official Gene Name
PRDM1
JASPAR
MA0508
Ensembl
ENSG00000057657
UniProt
O75626
Genevisible
O75626
RefSeq
NM_001198
Aliases
BLIMP1; PRDI-BF1
All peaks PRDM1
Download BED file
Non redundant peaks PRDM1
Download BED file
SEQUENCES PRDM1
Download FASTA file
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Datasets Table for PRDM1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
PRDM1 A-549 ENCODE Homo sapiens ENCSR977FEF 9,548
PRDM1 HEK293 GEO Homo sapiens GSE76494 17,996
PRDM1 U266B1 GEO Homo sapiens GSE102360 1,797
PRDM1 fetal testis GEO Homo sapiens GSE100639 78,548
PRDM1 HeLa-S3 ENCODE Homo sapiens ENCSR000ECY 4,564
PRDM1 plasmablast GEO Homo sapiens GSE142493 4,344
PRDM1 plasmablast G9A-i GEO Homo sapiens GSE142493 2,858
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks