RFX5

Information RFX5

Description

A lack of MHC-II expression results in a severe immunodeficiency syndrome called MHC-II deficiency, or the bare lymphocyte syndrome (BLS; MIM 209920). At least 4 complementation groups have been identified in B-cell lines established from patients with BLS. The molecular defects in complementation groups B, C, and D all lead to a deficiency in RFX, a nuclear protein complex that binds to the X box of MHC-II promoters. The lack of RFX binding activity in complementation group C results from mutations in the RFX5 gene encoding the 75-kD subunit of RFX (Steimle et al., 1995). RFX5 is the fifth member of the growing family of DNA-binding proteins sharing a novel and highly characteristic DNA-binding domain called the RFX motif. Multiple alternatively spliced transcript variants have been found but the full-length natures of only two have been determined. [provided by RefSeq, Jul 2008]

Full Name

regulatory factor X5

Source NCBI

Species

Homo sapiens [tax_id: 9606]

Genome

hg38

ReMap Statistics

Datasets
9
Biotypes
9
Peaks
79,180
Non-redundant peaks
50,316

TF Classification

Super Class
Helix-turn-helix domains
Class
Fork head / winged helix factors
Familly
RFX-related factors
Sub Familly
None

Source TFClass

External IDs

NCBI Gene
5993
Official Gene Name
RFX5
JASPAR
MA0510
Ensembl
ENSG00000143390
UniProt
P48382
Genevisible
P48382
RefSeq
NM_000449
Aliases
All peaks RFX5
Download BED file
Non redundant peaks RFX5
Download BED file
SEQUENCES RFX5
Download FASTA file
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Datasets Table for RFX5

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
RFX5 WA01 ENCODE Homo sapiens ENCSR000ECF 1,862
RFX5 SK-N-SH ENCODE Homo sapiens ENCSR000EHY 6,123
RFX5 MCF-7 ENCODE Homo sapiens ENCSR924TVL 10,165
RFX5 K-562 ENCODE Homo sapiens ENCSR000EGO 2,316
RFX5 IMR-90 ENCODE Homo sapiens ENCSR000EFD 5,837
RFX5 Hep-G2 ENCODE Homo sapiens ENCSR000EEA 14,147
RFX5 A-549 ENCODE Homo sapiens ENCSR064LJN 5,103
RFX5 GM12878 ENCODE Homo sapiens ENCSR000DZW 1,151
RFX5 HeLa-S3 ENCODE Homo sapiens ENCSR000ECX 32,476
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks