SMARCB1
Information SMARCB1
- Description
The protein encoded by this gene is part of a complex that relieves repressive chromatin structures, allowing the transcriptional machinery to access its targets more effectively. The encoded nuclear protein may also bind to and enhance the DNA joining activity of HIV-1 integrase. This gene has been found to be a tumor suppressor, and mutations in it have been associated with malignant rhabdoid tumors. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Dec 2015]
- Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
Source NCBI
- Species
Homo sapiens [tax_id: 9606]
- Genome
hg38
ReMap Statistics
- Datasets
- 20
- Biotypes
- 8
- Peaks
- 670,522
- Non-redundant peaks
- 226,283
TF Classification
- Super Class
- NA
- Class
- NA
- Familly
- NA
- Sub Familly
- NA
Source TFClass
External IDs
- NCBI Gene
- 6598
- Official Gene Name
- SMARCB1
- JASPAR
- Ensembl
- ENSG00000275837
- UniProt
- Q12824
- Genevisible
- Q12824
- RefSeq
- NM_001007468
- Aliases
- BAF47; CSS3; INI1; MRD15; PPP1R144; RDT; RTPS1; SNF5; SNF5L1; SWNTS1; Sfh1p; Snr1; hSNFS
Datasets Table for SMARCB1
| Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
|---|---|---|---|---|---|---|---|---|
| SMARCB1 | MCF-7 | Fulvestrant | GEO | Homo sapiens | GSE123284 | 50,458 | ||
| SMARCB1 | MCF-7 | DCDT | GEO | Homo sapiens | GSE123284 | 58,618 | ||
| SMARCB1 | MCF-7 | 4-hydroxytamoxifen | GEO | Homo sapiens | GSE123284 | 73,963 | ||
| SMARCB1 | MCF-7 | GEO | Homo sapiens | GSE123284 | 50,406 | |||
| SMARCB1 | Hep-G2 | GEO | Homo sapiens | GSE69566 | 23,874 | |||
| SMARCB1 | K-562 | ENCODE | Homo sapiens | ENCSR000EHN | 2,735 | |||
| SMARCB1 | MCF-7 | JQ1 | GEO | Homo sapiens | GSE123284 | 51,085 | ||
| SMARCB1 | MCF-7 | estrogen | GEO | Homo sapiens | GSE123284 | 74,034 | ||
| SMARCB1 | TTC-1240 | SMARCB1-FL | GEO | Homo sapiens | GSE124903 | 6,390 | ||
| SMARCB1 | TTC-1240 | delC | GEO | Homo sapiens | GSE124903 | 4,174 | ||
| SMARCB1 | TTC-1240 | R377H | GEO | Homo sapiens | GSE124903 | 7,581 | ||
| SMARCB1 | TTC-1240 | GEO | Homo sapiens | GSE124903 | 2,444 | |||
| SMARCB1 | RMG-I | GEO | Homo sapiens | GSE120058 | 1,512 | |||
| SMARCB1 | RMG-I | ARID1A-KO | GEO | Homo sapiens | GSE120058 | 1,920 | ||
| SMARCB1 | hiPSC | WT | GEO | Homo sapiens | GSE124903 | 32,386 | ||
| SMARCB1 | hiPSC | GEO | Homo sapiens | GSE124903 | 38,999 | |||
| SMARCB1 | HeLa-S3 | ENCODE | Homo sapiens | ENCSR000EDK | 54,573 | |||
| SMARCB1 | proliferating-human-fibroblast | ASO_LINC | GEO | Homo sapiens | GSE131711 | 49,707 | ||
| SMARCB1 | proliferating-human-fibroblast | ASO_Ctrl | GEO | Homo sapiens | GSE131711 | 49,883 | ||
| SMARCB1 | proliferating-human-fibroblast | GEO | Homo sapiens | GSE131711 | 35,780 | |||
| Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |