SOX5

Information SOX5

Description

Transcription factor involved in chondrocytes differentiation and cartilage formation (PubMed:1396566, PubMed:11702786, PubMed:8078769, PubMed:15529345, PubMed:14993235). Specifically binds the 5'-AACAAT-3' DNA motif present in enhancers and super-enhancers and promotes expression of genes important for chondrogenesis, including cartilage matrix protein-coding genes, such as COL2A1 and AGC1 (PubMed:9755172, PubMed:11702786, PubMed:26150426). Required for overt chondrogenesis when condensed prechondrocytes differentiate into early stage chondrocytes: SOX5 and SOX6 cooperatively bind with SOX9 on active enhancers and super-enhancers associated with cartilage-specific genes, and thereby potentiate SOX9's ability to transactivate (PubMed:11702786, PubMed:15529345, PubMed:14993235, PubMed:26150426). Not involved in precartilaginous condensation, the first step in chondrogenesis, during which skeletal progenitors differentiate into prechondrocytes (PubMed:14993235). Together with SOX6, required to form and maintain a pool of highly proliferating chondroblasts between epiphyses and metaphyses, to form columnar chondroblasts, delay chondrocyte prehypertrophy but promote hypertrophy, and to delay terminal differentiation of chondrocytes on contact with ossification fronts (PubMed:14993235). Binds to the proximal promoter region of the myelin protein MPZ gene (PubMed:26525805). {ECO:0000269|PubMed:11702786, ECO:0000269|PubMed:1396566, ECO:0000269|PubMed:14993235, ECO:0000269|PubMed:15529345, ECO:0000269|PubMed:26150426, ECO:0000269|PubMed:26525805, ECO:0000269|PubMed:8078769, ECO:0000269|PubMed:9755172}.(Source UnitProtKB).

Full Name

SRY (sex determining region Y)-box 5

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
1
Biotypes
1
Peaks
308
Non-redundant peaks
308

TF Classification

Familly
High-mobility group (HMG) domain factors
Sub Familly
SOX-related factors

Source JASPAR

External IDs

NCBI Gene
20678
Official Gene Name
Sox5
JASPAR
MA0087.1
MGI
MGI:98367
Ensembl
ENSMUSG00000041540
UniProt
P35710
Genevisible
P35710
RefSeq
Aliases
A730017D01Rik; AI528773
All peaks SOX5
Download BED file
Non redundant peaks SOX5
Download BED file
SEQUENCES SOX5
Download FASTA file
DOWNLOAD All ReMap
Got to catalogue

Datasets Table for SOX5

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
SOX5 E13-5 limbs-tail GEO Mus musculus GSE33419 308
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks