TBX21

Information TBX21

Description

Lineage-defining transcription factor which initiates Th1 lineage development from naive Th precursor cells both by activating Th1 genetic programs and by repressing the opposing Th2 and Th17 genetic programs. Activates transcription of a set of genes important for Th1 cell function, including those encoding IFN-gamma and the chemokine receptor CXCR3. Activates IFNG and CXCR3 genes in part by recruiting chromatin remodeling complexes including KDM6B, a SMARCA4-containing SWI/SNF-complex, and an H3K4me2-methyltransferase complex to their promoters and all of these complexes serve to establish a more permissive chromatin state conducive with transcriptional activation (PubMed:10761931, PubMed:17923685, PubMed:21095589). Can activate Th1 genes also via recruitment of Mediator complex and P-TEFb (composed of CDK9 and CCNT1/cyclin-T1) in the form of the super elongation complex (SEC) to super-enhancers and associated genes in activated Th1 cells (PubMed:27292648). Inhibits the Th17 cell lineage commitment by blocking RUNX1-mediated transactivation of Th17 cell-specific transcriptinal regulator RORC (PubMed:21151104). Inhibits the Th2 cell lineage commitment by suppressing the production of Th2 cytokines, such as IL-4, IL-5, and IL- 13, via repression of transcriptional regulators GATA3 and NFATC2 (PubMed:15662016, PubMed:21690296, PubMed:23616576). Protects Th1 cells from amplifying aberrant type-I IFN response in an IFN-gamma abundant microenvironment by acting as a repressor of type-I IFN transcription factors and type-I IFN- stimulated genes (PubMed:28623086). Acts as a regulator of antiviral B-cell responses; controls chronic viral infection by promoting the antiviral antibody IgG2a isotype switching and via regulation of a broad antiviral gene expression program (PubMed:27430722). {ECO:0000269|PubMed:10761931, ECO:0000269|PubMed:15662016, ECO:0000269|PubMed:17923685, ECO:0000269|PubMed:21095589, ECO:0000269|PubMed:21151104, ECO:0000269|PubMed:21690296, ECO:0000269|PubMed:23616576, ECO:0000269|PubMed:27292648, ECO:0000269|PubMed:27430722, ECO:0000269|PubMed:28607488, ECO:0000269|PubMed:28623086}.(Source UnitProtKB).

Full Name

T-box 21

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
9
Biotypes
5
Peaks
179,398
Non-redundant peaks
120,673

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
57765
Official Gene Name
Tbx21
JASPAR
MGI
MGI:1888984
Ensembl
ENSMUSG00000001444
UniProt
Q9JKD8
Genevisible
Q9JKD8
RefSeq
NM_019507
Aliases
T-bet; TBT1; Tbet; Tblym
All peaks TBX21
Download BED file
Non redundant peaks TBX21
Download BED file
SEQUENCES TBX21
Download FASTA file
DOWNLOAD All ReMap
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Datasets Table for TBX21

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
TBX21 T-cell GEO Mus musculus GSE40623 17,953
TBX21 Th1 GEO Mus musculus GSE33802 66,423
TBX21 CD4-pos nc GEO Mus musculus GSE96724 1,618
TBX21 CD4-pos IFN-g GEO Mus musculus GSE96724 4,760
TBX21 CD4-pos IFN-b GEO Mus musculus GSE96724 1,403
TBX21 EL4 GEO Mus musculus GSE62482 73,543
TBX21 T-cell KO GEO Mus musculus GSE40623 24
TBX21 spleen GEO Mus musculus GSE77695 10,252
TBX21 spleen GEO Mus musculus GSE72278 3,422
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks