Trf2

Information Trf2

Description

The gene TATA box binding protein-related factor 2 is referred to in FlyBase by the symbol DmelTrf2 (CG18009, FBgn0261793). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (3 unique). Gene sequence location is X:8409272..8433011. Its molecular function is described by 7 unique terms, many of which group under: binding; molecular function regulator; transcription regulator activity; general transcription initiation factor activity; RNA polymerase II transcription regulatory region sequence-specific DNA binding. It is involved in the biological process described with 8 unique terms, many of which group under: gland development; response to organic cyclic compound; open tracheal system development; response to oxygen-containing compound; cell development. 64 alleles are reported. The phenotypes of these alleles manifest in: fat body; adipose system; portion of tissue; larval neuroblast; tarsal segment. The phenotypic classes of alleles include: phenotype; lethal; increased mortality during development; some die during P-stage.

Full Name

TATA box binding protein-related factor 2

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
3
Biotypes
2
Peaks
17,814
Non-redundant peaks
14,030

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
31773
Official Gene Name
Trf2
JASPAR
Ensembl
FBgn0261793
UniProt
Genevisible
RefSeq
NM_206654
Aliases
CG11195; CG18009; DmelCG18009; TLF; TRF2; Trf2; dTRF2; dTRF2L; dTRF2S; dTrf2; l(1)G0039; l(1)G0071; l(1)G0295; l(1)G0425; p79/TRF2; trf2
All peaks Trf2
Download BED file
Non redundant peaks Trf2
Download BED file
SEQUENCES Trf2
Download FASTA file
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Datasets Table for Trf2

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
Trf2 Schneider-2 GEO Drosophila melanogaster GSE97841 236
Trf2 embryo 2h-4h_ab-275_homemade GEO Drosophila melanogaster GSE52029 7,783
Trf2 embryo 2h-4h_ab-274_homemade GEO Drosophila melanogaster GSE52029 9,795
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks