abd-A

Information abd-A

Description

The gene abdominal A is referred to in FlyBase by the symbol Dmelabd-A (CG10325, FBgn0000014). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3R:16807214..16830049. Its molecular function is described by: DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding; sequence-specific DNA binding; cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 27 unique terms, many of which group under: developmental process involved in reproduction; movement of cell or subcellular component; multicellular organism reproduction; mesodermal cell fate commitment; cardiac muscle tissue development. 135 alleles are reported. The phenotypes of these alleles manifest in: dorsal vessel primordium; larval abdominal segment 11; primordial germ cell; A1-7 ventral acute muscle 1; lch5 ligament attachment cell. The phenotypic classes of alleles include: increased mortality during development; cell number defective; sterile; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed during late larval stages, during early pupal stages.

Full Name

abdominal A

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
5
Biotypes
3
Peaks
82,502
Non-redundant peaks
48,908

TF Classification

Familly
Homeo domain factors
Sub Familly
HOX-related factors

Source JASPAR

External IDs

NCBI Gene
42037
Official Gene Name
abd-A
JASPAR
MA0206.1
Ensembl
FBgn0000014
UniProt
P29555
Genevisible
P29555
RefSeq
NM_169733
Aliases
abd-A
All peaks abd-A
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Non redundant peaks abd-A
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SEQUENCES abd-A
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Datasets Table for abd-A

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
abd-A adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR609JDR 32,918
abd-A Kc167 GEO Drosophila melanogaster GSE122574 9,354
abd-A Kc167 Hth GEO Drosophila melanogaster GSE122574 10,305
abd-A Kc167 GEO Drosophila melanogaster GSE69796 9,422
abd-A S2-DRSC GEO Drosophila melanogaster GSE101554 20,503
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks