barr

Information barr

Description

The gene barren is referred to in FlyBase by the symbol Dmelarr (CG10726, FBgn0014127). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 2L:20058163..20061370. Its molecular function is described by: protein binding; chromatin binding; DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activator activity; DNA topoisomerase binding. It is involved in the biological process described with 9 unique terms, many of which group under: cellular process; sister chromatid segregation; cellular component organization or biogenesis; nuclear chromosome segregation; chromosome separation. 30 alleles are reported. The phenotypes of these alleles manifest in: peripheral nervous system; trachea; somatic stem cell; compound cell cluster organ; central nervous system. The phenotypic classes of alleles include: modifier of variegation; wild-type; phenotype; some die during pupal stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages.

Full Name

barren

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
1
Biotypes
1
Peaks
3,274
Non-redundant peaks
3,274

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
35287
Official Gene Name
barr
JASPAR
Ensembl
FBgn0014127
UniProt
Genevisible
RefSeq
NM_165317
Aliases
barr
All peaks barr
Download BED file
Non redundant peaks barr
Download BED file
SEQUENCES barr
Download FASTA file
DOWNLOAD All ReMap
Got to catalogue

Datasets Table for barr

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
barr Kc167 interphase GEO Drosophila melanogaster GSE54529 3,274
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks