cnc

Information cnc

Description

The gene cap-n-collar is referred to in FlyBase by the symbol Dmelcnc (CG43286, FBgn0262975). It is a protein_coding_gene from Dmel. It has 16 annotated transcripts and 16 polypeptides (7 unique). Gene sequence location is 3R:23185580..23226711. Its molecular function is described by: DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding; protein heterodimerization activity; DNA-binding transcription factor activity. It is involved in the biological process described with 15 unique terms, many of which group under: response to stress; cellular response to stimulus; intestinal stem cell homeostasis; establishment or maintenance of cytoskeleton polarity; regulation of bicoid mRNA localization. 71 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; embryonic/larval foregut; chorionic specialization; adult thoracic segment; epithelium. The phenotypic classes of alleles include: neuroanatomy defective; increased mortality during development; phenotype; fertile.

Full Name

cap-n-collar

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
3
Biotypes
1
Peaks
31,476
Non-redundant peaks
24,943

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
42743
Official Gene Name
cnc
JASPAR
Ensembl
FBgn0262975
UniProt
P20482
Genevisible
P20482
RefSeq
NM_170059
Aliases
cnc
All peaks cnc
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Non redundant peaks cnc
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SEQUENCES cnc
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Datasets Table for cnc

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
cnc adult whole-fly ENCODE Drosophila melanogaster ENCSR785GVH 13,446
cnc adult whole-fly ENCODE Drosophila melanogaster ENCSR504XNN 10,209
cnc adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR360YKV 7,821
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks