opa

Information opa

Description

The gene odd paired is referred to in FlyBase by the symbol Dmelopa (CG1133, FBgn0003002). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (all unique). Gene sequence location is 3R:4852813..4869979. Its molecular function is described by: RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific; DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription factor activity; RNA polymerase II transcription regulatory region sequence-specific DNA binding. It is involved in the biological process described with 6 unique terms, many of which group under: developmental process; anatomical structure development; cell motility; central nervous system development; digestive tract development. 46 alleles are reported. The phenotypes of these alleles manifest in: mesodermal derivative; cuticle; embryonic gnathal segment; trunk mesoderm derivative; segment of antenna. The phenotypic classes of alleles include: pair rule phenotype; some die during embryonic stage; lethal; visible; lethal - all die before end of embryonic stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages.

Full Name

odd paired

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
3
Biotypes
1
Peaks
35,619
Non-redundant peaks
21,845

TF Classification

Familly
C2H2 zinc finger factors
Sub Familly
More than 3 adjacent zinc finger factors

Source JASPAR

External IDs

NCBI Gene
40605
Official Gene Name
opa
JASPAR
MA0456.1
Ensembl
FBgn0003002
UniProt
P39768
Genevisible
P39768
RefSeq
NM_079504
Aliases
opa
All peaks opa
Download BED file
Non redundant peaks opa
Download BED file
SEQUENCES opa
Download FASTA file
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Datasets Table for opa

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
opa embryo blastoderm GEO Drosophila melanogaster GSE141538 10,398
opa embryo early_homemade GEO Drosophila melanogaster GSE140722 14,171
opa embryo late_homemade GEO Drosophila melanogaster GSE140722 11,050
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks