run

Information run

Description

The gene runt is referred to in FlyBase by the symbol Dmel un (CG1849, FBgn0003300). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is X:20690670..20697321. Its molecular function is described by: sequence-specific DNA binding; ATP binding; DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 10 unique terms, many of which group under: central nervous system development; primary sex determination; stem cell differentiation; plasma membrane bounded cell projection organization; pattern specification process. 95 alleles are reported. The phenotypes of these alleles manifest in: presumptive embryonic/larval integumentary system; vch1 neuron; cuticle; gland; developing material anatomical entity. The phenotypic classes of alleles include: increased mortality; embryonic/larval segmentation phenotype; phenotype; pair rule phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 00-12 hour embryonic stages.

Full Name

runt

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
1
Biotypes
1
Peaks
21,485
Non-redundant peaks
21,485

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
33059
Official Gene Name
run
JASPAR
Ensembl
FBgn0003300
UniProt
P22814
Genevisible
P22814
RefSeq
NM_078700
Aliases
1; 2; AA33; CG1849; DmelCG1849; LB5; P235; RUN; Rnt; Run; Runt; l(1)19Ea; l(1)AA33; l(1)B2/13.1; l(1)LB9; lLB5; leg; run
All peaks run
Download BED file
Non redundant peaks run
Download BED file
SEQUENCES run
Download FASTA file
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Datasets Table for run

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
run adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR392IEL 21,485
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks