shep

Information shep

Description

The gene alan shepard is referred to in FlyBase by the symbol Dmelshep (CG32423, FBgn0052423). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (6 unique). Gene sequence location is 3L:5155821..5277944. Its molecular function is described by: mRNA binding; RNA binding; poly(U) RNA binding; mRNA 3'-UTR binding; poly(A) binding. It is involved in the biological process described with 7 unique terms, many of which group under: response to abiotic stimulus; response to stimulus; developmental process; response to gravity; anatomical structure development. 65 alleles are reported. The phenotypes of these alleles manifest in: cell; neuron; cellular anatomical entity; nervous system; organism. The phenotypic classes of alleles include: phenotype; viable; increased mortality; short lived. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult female stages.

Full Name

alan shepard

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
4
Biotypes
2
Peaks
10,262
Non-redundant peaks
6,673

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
38605
Official Gene Name
shep
JASPAR
Ensembl
FBgn0052423
UniProt
Q8MSV2
Genevisible
Q8MSV2
RefSeq
NM_168114
Aliases
shep
All peaks shep
Download BED file
Non redundant peaks shep
Download BED file
SEQUENCES shep
Download FASTA file
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Datasets Table for shep

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
shep Kc167 guinea-pig GEO Drosophila melanogaster GSE51462 1,509
shep Kc167 rabbit GEO Drosophila melanogaster GSE51462 2,065
shep ML-DmBG3-c2 alternate-ab GEO Drosophila melanogaster GSE40797 2,591
shep ML-DmBG3-c2 GEO Drosophila melanogaster GSE40797 4,097
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks