vtd

Information vtd

Description

The gene verthandi is referred to in FlyBase by the symbol Dmelvtd (CG17436, FBgn0260987). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (all unique). Gene sequence location is 3L:27136525..27157999. Its molecular function is described by: chromatin binding. It is involved in the biological process described with 8 unique terms, many of which group under: mitotic cell cycle; cell cycle; synaptonemal complex organization; metabolic process; organic substance metabolic process. 51 alleles are reported. The phenotypes of these alleles manifest in: wing disc; intracellular anatomical structure; sensillum; gland; pronucleus. The phenotypic classes of alleles include: increased mortality during development; increased mortality; lethal; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages.

Full Name

verthandi

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
6
Biotypes
1
Peaks
72,614
Non-redundant peaks
33,290

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
3354896
Official Gene Name
vtd
JASPAR
Ensembl
FBgn0260987
UniProt
Genevisible
RefSeq
NM_001300711
Aliases
vtd
All peaks vtd
Download BED file
Non redundant peaks vtd
Download BED file
SEQUENCES vtd
Download FASTA file
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Datasets Table for vtd

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
vtd Kc167 GEO Drosophila melanogaster GSE54529 19,726
vtd Kc167 NT GEO Drosophila melanogaster GSE62904 15,187
vtd Kc167 FLV GEO Drosophila melanogaster GSE118756 7,570
vtd Kc167 GEO Drosophila melanogaster GSE118756 6,817
vtd Kc167 CTCF-RNAi GEO Drosophila melanogaster GSE54529 10,136
vtd Kc167 HS GEO Drosophila melanogaster GSE62904 13,178
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks