ReMap2022

Examples: FOXA1, MCF-7, Limb, third-instar, abd-A, ENCSR440VKE, GSE114266, Col-0_seedling, WRKY33 Advanced search

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About ReMap

ReMap is a large scale integrative analysis of DNA-binding experiments for Homo sapiens, Mus musculus, Drosophila melanogaster and Arabidopsis thaliana transcriptional regulators. The catalogues are the results of the manual curation of ChIP-seq, ChIP-exo, DAP-seq from public sources (GEO, ENCODE, ENA).

ReMap database growth

1,210

Transcriptionnal regulators

Search for specific factors

737

Cell lines and tissues

Search for specific cells

8,103

QC ChIP-seq datasets

Browse a given dataset

182 million

Binding regions

Download our data

648

Transcriptional Regulators

Search Mouse TFs

373

Tissues and cells

Search Mouse biotypes

5,503

QC ChIP-seq datasets

Browse a given dataset

123 million

Binding peaks

Download Mouse cataloqgue

550

Transcriptional Regulators

Search Droso TFs

17

Biotypes

Search Droso biotypes

1,205

QC ChIP-seq datasets

Browse a given dataset

16.6 million

Binding peaks

Download Droso cataloqgue

423

Transcriptional Regulators

Browse Thaliana datasets

4.8 million

Transcriptional factors regions

Download Thaliana data

33

Histone modifications

Browse a given dataset

4,528,203

Histone binding regions

Download Thaliana data

Hg38 UCSC Browser (US)

Browse ReMap tracks

Mm10 UCSC Browser (US)

Browse ReMap tracks

Dm6 UCSC Browser (US)

Browse ReMap tracks

Atha1 UCSC Browser (US)

Browse ReMap tracks

Hg38 Ensembl e!

Browse regulatory tracks

Mm10 Ensembl e!

Browse regulatory tracks

Dm6 Ensembl e!

Browse regulatory tracks

Thaliana Ensembl Plants e!

Browse regulatory tracks

Papers using ReMap

Citation page

Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer. Huang KK, Huang J, Wu JKL, Lee M, Tay ST, Kumar V, Ramnarayanan K, Padmanabhan N, Xu C, Tan ALK, Chan C, Kappei D, Göke J, Tan P Genome biology 2021 Jan 22;22(1):44 10.1186/s13059-021-02261-x

Integrative pathway enrichment analysis of multivariate omics data. Paczkowska M, Barenboim J, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC, Reimand J Nature communications 2020 Feb 5;11(1):735 10.1038/s41467-019-13983-9

Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer. Achinger-Kawecka J, Valdes-Mora F, Luu PL, Giles KA, Caldon CE, Qu W, Nair S, Soto S, Locke WJ, Yeo-Teh NS, Gould CM, Du Q, Smith GC, Ramos IR, Fernandez KF, Hoon DS, Gee JMW, Stirzaker C, Clark SJ Nature communications 2020 Jan 16;11(1):320 10.1038/s41467-019-14098-x

Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions. Ibarra IL, Hollmann NM, Klaus B, Augsten S, Velten B, Hennig J, Zaugg JB Nature communications 2020 Jan 8;11(1):124 10.1038/s41467-019-13888-7

Citing ReMap

PubMed | NAR | PDF

ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments
Fayrouz Hammal, Pierre De Langen, Aurélie Bergon, Fabrice Lopez, Benoit Ballester. Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022

Species

Homo sapiens

Mus musculus

Drosophila melanogaster

Arabidobsis thaliana

About ReMap

ReMap database growth

1,210

737

8,103

182 million

648

373

5,503

123 million

550

17

1,205

16.6 million

423

4.8 million

33

4,528,203

Hg38 UCSC Browser (US)

Mm10 UCSC Browser (US)

Dm6 UCSC Browser (US)

Atha1 UCSC Browser (US)

Hg38 Ensembl e!

Mm10 Ensembl e!

Dm6 Ensembl e!

Thaliana Ensembl Plants e!

Papers using ReMap

Citing ReMap

Langdon's Birthday