ErrorException (E_NOTICE)
Trying to get property 'peaks_NR' of non-object ErrorException thrown with message "Trying to get property 'peaks_NR' of non-object" Stacktrace: #55 ErrorException in /usr/local/apache2/htdocs/remap-web2022/app/Http/Controllers/SearchController.php:1201 #54 Illuminate\Foundation\Bootstrap\HandleExceptions:handleError in /usr/local/apache2/htdocs/remap-web2022/app/Http/Controllers/SearchController.php:1201 #53 App\Http\Controllers\SearchController:OpenBiotypePage in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Controller.php:54 #52 call_user_func_array in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Controller.php:54 #51 Illuminate\Routing\Controller:callAction in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/ControllerDispatcher.php:45 #50 Illuminate\Routing\ControllerDispatcher:dispatch in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Route.php:219 #49 Illuminate\Routing\Route:runController in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Route.php:176 #48 Illuminate\Routing\Route:run in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Router.php:682 #47 Illuminate\Routing\Router:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:30 #46 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Middleware/SubstituteBindings.php:41 #45 Illuminate\Routing\Middleware\SubstituteBindings:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #44 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #43 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Middleware/VerifyCsrfToken.php:75 #42 Illuminate\Foundation\Http\Middleware\VerifyCsrfToken:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #41 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #40 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/View/Middleware/ShareErrorsFromSession.php:49 #39 Illuminate\View\Middleware\ShareErrorsFromSession:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #38 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #37 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Session/Middleware/StartSession.php:63 #36 Illuminate\Session\Middleware\StartSession:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #35 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #34 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Cookie/Middleware/AddQueuedCookiesToResponse.php:37 #33 Illuminate\Cookie\Middleware\AddQueuedCookiesToResponse:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #32 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #31 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Cookie/Middleware/EncryptCookies.php:66 #30 Illuminate\Cookie\Middleware\EncryptCookies:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #29 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #28 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:104 #27 Illuminate\Pipeline\Pipeline:then in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Router.php:684 #26 Illuminate\Routing\Router:runRouteWithinStack in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Router.php:659 #25 Illuminate\Routing\Router:runRoute in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Router.php:625 #24 Illuminate\Routing\Router:dispatchToRoute in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Router.php:614 #23 Illuminate\Routing\Router:dispatch in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Kernel.php:176 #22 Illuminate\Foundation\Http\Kernel:Illuminate\Foundation\Http\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:30 #21 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/app/Http/Middleware/Cors.php:18 #20 App\Http\Middleware\Cors:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #19 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #18 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/fideloper/proxy/src/TrustProxies.php:57 #17 Fideloper\Proxy\TrustProxies:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #16 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #15 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Middleware/TransformsRequest.php:31 #14 Illuminate\Foundation\Http\Middleware\TransformsRequest:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #13 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #12 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Middleware/TransformsRequest.php:31 #11 Illuminate\Foundation\Http\Middleware\TransformsRequest:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #10 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #9 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Middleware/ValidatePostSize.php:27 #8 Illuminate\Foundation\Http\Middleware\ValidatePostSize:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #7 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #6 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Middleware/CheckForMaintenanceMode.php:62 #5 Illuminate\Foundation\Http\Middleware\CheckForMaintenanceMode:handle in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:151 #4 Illuminate\Pipeline\Pipeline:Illuminate\Pipeline\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Routing/Pipeline.php:53 #3 Illuminate\Routing\Pipeline:Illuminate\Routing\{closure} in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Pipeline/Pipeline.php:104 #2 Illuminate\Pipeline\Pipeline:then in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Kernel.php:151 #1 Illuminate\Foundation\Http\Kernel:sendRequestThroughRouter in /usr/local/apache2/htdocs/remap-web2022/vendor/laravel/framework/src/Illuminate/Foundation/Http/Kernel.php:116 #0 Illuminate\Foundation\Http\Kernel:handle in /usr/local/apache2/htdocs/remap-web2022/public/index.php:55
Application frames (4) All frames (56)
55
ErrorException
/
app
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Http
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Controllers
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SearchController.php
1201
54
Illuminate
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Foundation
\
Bootstrap
\
HandleExceptions
handleError
/
app
/
Http
/
Controllers
/
SearchController.php
1201
53
App
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Http
\
Controllers
\
SearchController
OpenBiotypePage
/
vendor
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laravel
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framework
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src
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Illuminate
/
Routing
/
Controller.php
54
52
call_user_func_array
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vendor
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laravel
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framework
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src
/
Illuminate
/
Routing
/
Controller.php
54
51
Illuminate
\
Routing
\
Controller
callAction
/
vendor
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laravel
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framework
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src
/
Illuminate
/
Routing
/
ControllerDispatcher.php
45
50
Illuminate
\
Routing
\
ControllerDispatcher
dispatch
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vendor
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laravel
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framework
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src
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Illuminate
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Routing
/
Route.php
219
49
Illuminate
\
Routing
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Route
runController
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vendor
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laravel
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framework
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src
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Illuminate
/
Routing
/
Route.php
176
48
Illuminate
\
Routing
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Route
run
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vendor
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laravel
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framework
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src
/
Illuminate
/
Routing
/
Router.php
682
47
Illuminate
\
Routing
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Router
Illuminate
\
Routing
\
{closure}
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vendor
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laravel
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framework
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src
/
Illuminate
/
Routing
/
Pipeline.php
30
46
Illuminate
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Routing
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Pipeline
Illuminate
\
Routing
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{closure}
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vendor
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laravel
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framework
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src
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Illuminate
/
Routing
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Middleware
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SubstituteBindings.php
41
45
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Routing
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Middleware
\
SubstituteBindings
handle
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vendor
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laravel
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src
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Pipeline
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Pipeline.php
151
44
Illuminate
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Pipeline
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Pipeline
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Pipeline
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{closure}
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vendor
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laravel
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framework
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src
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Illuminate
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Routing
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Pipeline.php
53
43
Illuminate
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Routing
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Pipeline
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Routing
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{closure}
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vendor
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laravel
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framework
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src
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Illuminate
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Foundation
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Http
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Middleware
/
VerifyCsrfToken.php
75
42
Illuminate
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Foundation
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Http
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Middleware
\
VerifyCsrfToken
handle
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vendor
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laravel
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framework
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src
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Illuminate
/
Pipeline
/
Pipeline.php
151
41
Illuminate
\
Pipeline
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Pipeline
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Pipeline
\
{closure}
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vendor
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laravel
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framework
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src
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Illuminate
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Routing
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Pipeline.php
53
40
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Routing
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{closure}
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vendor
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laravel
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framework
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src
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Illuminate
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View
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Middleware
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ShareErrorsFromSession.php
49
39
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View
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ShareErrorsFromSession
handle
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vendor
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laravel
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src
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Pipeline
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Pipeline.php
151
38
Illuminate
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Pipeline
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Pipeline
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vendor
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Pipeline.php
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37
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src
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Session
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Middleware
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StartSession.php
63
36
Illuminate
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Session
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StartSession
handle
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vendor
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laravel
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framework
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src
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Illuminate
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Pipeline
/
Pipeline.php
151
35
Illuminate
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Pipeline
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Pipeline
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Pipeline
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{closure}
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vendor
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laravel
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framework
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src
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Illuminate
/
Routing
/
Pipeline.php
53
34
Illuminate
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Routing
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Pipeline
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Routing
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{closure}
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vendor
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laravel
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framework
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src
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Illuminate
/
Cookie
/
Middleware
/
AddQueuedCookiesToResponse.php
37
33
Illuminate
\
Cookie
\
Middleware
\
AddQueuedCookiesToResponse
handle
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
32
Illuminate
\
Pipeline
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Pipeline
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Pipeline
\
{closure}
/
vendor
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laravel
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framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
31
Illuminate
\
Routing
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Pipeline
Illuminate
\
Routing
\
{closure}
/
vendor
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laravel
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framework
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src
/
Illuminate
/
Cookie
/
Middleware
/
EncryptCookies.php
66
30
Illuminate
\
Cookie
\
Middleware
\
EncryptCookies
handle
/
vendor
/
laravel
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framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
29
Illuminate
\
Pipeline
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Pipeline
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\
Pipeline
\
{closure}
/
vendor
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laravel
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framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
28
Illuminate
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Illuminate
\
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\
{closure}
/
vendor
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laravel
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framework
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src
/
Illuminate
/
Pipeline
/
Pipeline.php
104
27
Illuminate
\
Pipeline
\
Pipeline
then
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Router.php
684
26
Illuminate
\
Routing
\
Router
runRouteWithinStack
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Router.php
659
25
Illuminate
\
Routing
\
Router
runRoute
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Router.php
625
24
Illuminate
\
Routing
\
Router
dispatchToRoute
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Router.php
614
23
Illuminate
\
Routing
\
Router
dispatch
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Kernel.php
176
22
Illuminate
\
Foundation
\
Http
\
Kernel
Illuminate
\
Foundation
\
Http
\
{closure}
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
30
21
Illuminate
\
Routing
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Pipeline
Illuminate
\
Routing
\
{closure}
/
app
/
Http
/
Middleware
/
Cors.php
18
20
App
\
Http
\
Middleware
\
Cors
handle
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
19
Illuminate
\
Pipeline
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Pipeline
Illuminate
\
Pipeline
\
{closure}
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
18
Illuminate
\
Routing
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Pipeline
Illuminate
\
Routing
\
{closure}
/
vendor
/
fideloper
/
proxy
/
src
/
TrustProxies.php
57
17
Fideloper
\
Proxy
\
TrustProxies
handle
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
16
Illuminate
\
Pipeline
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Pipeline
Illuminate
\
Pipeline
\
{closure}
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
15
Illuminate
\
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Pipeline
Illuminate
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\
{closure}
/
vendor
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laravel
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framework
/
src
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/
Foundation
/
Http
/
Middleware
/
TransformsRequest.php
31
14
Illuminate
\
Foundation
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Http
\
Middleware
\
TransformsRequest
handle
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
13
Illuminate
\
Pipeline
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Pipeline
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Pipeline
\
{closure}
/
vendor
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laravel
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framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
12
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Illuminate
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Routing
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{closure}
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vendor
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laravel
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framework
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src
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Illuminate
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Foundation
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Http
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Middleware
/
TransformsRequest.php
31
11
Illuminate
\
Foundation
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Http
\
Middleware
\
TransformsRequest
handle
/
vendor
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laravel
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framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
10
Illuminate
\
Pipeline
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Pipeline
Illuminate
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Pipeline
\
{closure}
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
9
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\
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Pipeline
Illuminate
\
Routing
\
{closure}
/
vendor
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laravel
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framework
/
src
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Illuminate
/
Foundation
/
Http
/
Middleware
/
ValidatePostSize.php
27
8
Illuminate
\
Foundation
\
Http
\
Middleware
\
ValidatePostSize
handle
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
7
Illuminate
\
Pipeline
\
Pipeline
Illuminate
\
Pipeline
\
{closure}
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
6
Illuminate
\
Routing
\
Pipeline
Illuminate
\
Routing
\
{closure}
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Middleware
/
CheckForMaintenanceMode.php
62
5
Illuminate
\
Foundation
\
Http
\
Middleware
\
CheckForMaintenanceMode
handle
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
151
4
Illuminate
\
Pipeline
\
Pipeline
Illuminate
\
Pipeline
\
{closure}
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
53
3
Illuminate
\
Routing
\
Pipeline
Illuminate
\
Routing
\
{closure}
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
104
2
Illuminate
\
Pipeline
\
Pipeline
then
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Kernel.php
151
1
Illuminate
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Foundation
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Http
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Kernel
sendRequestThroughRouter
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Kernel.php
116
0
Illuminate
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Foundation
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Http
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Kernel
handle
/
public
/
index.php
55
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
app
/
Http
/
Controllers
/
SearchController.php
                $table_data[$i][6] = '<a href="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc='.$dataset.'">'.$dataset.'</a>';
            else if (!strncmp($dataset, "ENC", 3))
                $table_data[$i][6] = '<a href="http://www.encodeproject.org/experiments/'.$dataset.'">'.$dataset.'</a>';
            else if (!strncmp($dataset, "ERP", 3))
                $table_data[$i][6] = '<a href="https://www.ebi.ac.uk/arrayexpress/search.html?query='.$dataset.'">'.$dataset.'</a>';
            else
                $table_data[$i][6] = $dataset;
            
            // Peaks
            //$peaks_path = $release_data[2020][$genome]['datasets'];
            $peaks_dir = $dataset.'.'.$table_data[$i][2];
            if ($experiments[$i]['target_modification'] != 'no') $peaks_dir .= strtoupper($experiments[$i]['target_modification']); 
            $peaks_dir .= '.'.$biotype_name;
            if ($experiments[$i]['biotype_modification'] != '') $peaks_dir .= '_'.str_replace(' ', '_', $experiments[$i]['biotype_modification']);
  
            $dataset_name=$experiments[$i]['dataset_name'];
//return $experiments;
            //return number_format(DB::table('remap_peaks')->where('tax_id',$tax_id)->where('type','dataset')->where('name',$dataset_name)->first()->peaks_NR);
            
$nb_peaks = number_format(DB::table('remap_peaks')->where('tax_id',$tax_id)->where('type','dataset')->where('name',$dataset_name)->first()->peaks_NR);  
 
            if ($experiments[$i]['target']['target_type_id'] == 3) {
                $peaks_path = $release_data[2020][$genome]['datasets_histone'];
                $table_data[$i][7] = 'Download ('.$nb_peaks.') <a class="fa fa-download" href='.asset($peaks_path.'/'.$peaks_dir.'.bed.gz></a>');
            }
            else {
                $peaks_path = $release_data[2022][$genome]['datasets'];            
                $table_data[$i][7] = 'Download ('.$nb_peaks.') <a class="fa fa-download" href='.asset($peaks_path.'/'.$peaks_dir.'.bed.gz></a>');
            }
        }
        
        $function_source = 'Source BRENDA Tissue Ontology (BTO)';
        $stats_trans_act = 'X';
        if($tax_id!=3702){
                if($biotype_id<1) {
                    $stats_peaks = DB::table('remap_peaks')->where('name',$biotype_name)->where('tax_id',$tax_id)->where('type','biotype_all')->first()->peaks_NR;
                    $stats_nr_peaks = DB::table('remap_peaks')->where('name',$biotype_name)->where('tax_id',$tax_id)->where('type','biotype_nr')->first()->peaks_NR; 
                }else {
                    $stats_peaks = DB::table('remap_peaks')->where('id',$biotype_id)->where('tax_id',$tax_id)->where('type','biotype_all')->first()->peaks_NR;
                    $stats_nr_peaks = DB::table('remap_peaks')->where('id',$biotype_id)->where('tax_id',$tax_id)->where('type','biotype_nr')->first()->peaks_NR;                     
Arguments
  1. "Trying to get property 'peaks_NR' of non-object"
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
app
/
Http
/
Controllers
/
SearchController.php
                $table_data[$i][6] = '<a href="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc='.$dataset.'">'.$dataset.'</a>';
            else if (!strncmp($dataset, "ENC", 3))
                $table_data[$i][6] = '<a href="http://www.encodeproject.org/experiments/'.$dataset.'">'.$dataset.'</a>';
            else if (!strncmp($dataset, "ERP", 3))
                $table_data[$i][6] = '<a href="https://www.ebi.ac.uk/arrayexpress/search.html?query='.$dataset.'">'.$dataset.'</a>';
            else
                $table_data[$i][6] = $dataset;
            
            // Peaks
            //$peaks_path = $release_data[2020][$genome]['datasets'];
            $peaks_dir = $dataset.'.'.$table_data[$i][2];
            if ($experiments[$i]['target_modification'] != 'no') $peaks_dir .= strtoupper($experiments[$i]['target_modification']); 
            $peaks_dir .= '.'.$biotype_name;
            if ($experiments[$i]['biotype_modification'] != '') $peaks_dir .= '_'.str_replace(' ', '_', $experiments[$i]['biotype_modification']);
  
            $dataset_name=$experiments[$i]['dataset_name'];
//return $experiments;
            //return number_format(DB::table('remap_peaks')->where('tax_id',$tax_id)->where('type','dataset')->where('name',$dataset_name)->first()->peaks_NR);
            
$nb_peaks = number_format(DB::table('remap_peaks')->where('tax_id',$tax_id)->where('type','dataset')->where('name',$dataset_name)->first()->peaks_NR);  
 
            if ($experiments[$i]['target']['target_type_id'] == 3) {
                $peaks_path = $release_data[2020][$genome]['datasets_histone'];
                $table_data[$i][7] = 'Download ('.$nb_peaks.') <a class="fa fa-download" href='.asset($peaks_path.'/'.$peaks_dir.'.bed.gz></a>');
            }
            else {
                $peaks_path = $release_data[2022][$genome]['datasets'];            
                $table_data[$i][7] = 'Download ('.$nb_peaks.') <a class="fa fa-download" href='.asset($peaks_path.'/'.$peaks_dir.'.bed.gz></a>');
            }
        }
        
        $function_source = 'Source BRENDA Tissue Ontology (BTO)';
        $stats_trans_act = 'X';
        if($tax_id!=3702){
                if($biotype_id<1) {
                    $stats_peaks = DB::table('remap_peaks')->where('name',$biotype_name)->where('tax_id',$tax_id)->where('type','biotype_all')->first()->peaks_NR;
                    $stats_nr_peaks = DB::table('remap_peaks')->where('name',$biotype_name)->where('tax_id',$tax_id)->where('type','biotype_nr')->first()->peaks_NR; 
                }else {
                    $stats_peaks = DB::table('remap_peaks')->where('id',$biotype_id)->where('tax_id',$tax_id)->where('type','biotype_all')->first()->peaks_NR;
                    $stats_nr_peaks = DB::table('remap_peaks')->where('id',$biotype_id)->where('tax_id',$tax_id)->where('type','biotype_nr')->first()->peaks_NR;                     
Arguments
  1. 8
    
  2. "Trying to get property 'peaks_NR' of non-object"
    
  3. "/usr/local/apache2/htdocs/remap-web2022/app/Http/Controllers/SearchController.php"
    
  4. 1201
    
  5. array:40 [
      "biotype_name" => "AML"
      "tax_id" => "9606"
      "biotype_id" => 112030
      "biotype_query" => "AML"
      "short_biotype" => "AML"
      "description" => "Adult acute myeloid leukemia (AML) is a disease in which cancer (malignant) cells are found in the blood and bone marrow. More common in adults, the proliferating cells are of the myeloid hematopoietic series and the cells appearing in the blood are primitive granulocytes or monocytes."
      "ecotype" => null
      "experiments" => Collection {#442}
      "category" => "Cancer cell line"
      "lineage" => "Ectoderm"
      "tissue" => "Breast"
      "karyotype" => "Cancer"
      "sex" => "Female"
      "ref_cellosaurus_id" => 5
      "cellosaurus" => "AML cell"
      "efo" => null
      "efo_id" => 3
      "brenda_tissue_id" => 2
      "brenda_tissue" => "BTO_0001545"
      "bto_link" => "BTO_0001545"
      "wiki" => "MCF-7"
      "atcc" => "HTB-22"
      "synonyms_id" => 4
      "synonyms" => ""
      "syno" => ""
      "ensembl_gene" => "ENSG00000072364"
      "annotation" => Collection {#448}
      "border_color" => "light-blue"
      "box_color" => "aqua"
      "genome" => "hg38"
      "release_data" => array:4 [
        2022 => array:7 [
          "dm6" => array:12 [
            "all" => "16.6 million"
            "merged" => "12.9 million"
            "crm" => "617,567"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2022/dm6/MACS2/remap2022_all_macs2_dm6_v1_0.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2022/dm6/MACS2/remap2022_nr_macs2_dm6_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2022/dm6/MACS2/remap2022_crm_macs2_dm6_v1_0.bed.gz"
            "allTF_dir" => "storage/remap2022/dm6/MACS2/TF"
            "fasta" => "storage/remap2022/dm6/MACS2/FASTA"
            "biotypes_tf" => "storage/remap2022/dm6/MACS2/BIOTYPE"
            "datasets" => "storage/remap2022/dm6/MACS2/DATASET"
            "biotypes" => "storage/remap2022/biotypes/remap2022_dmel_biotypes.xlsx"
            "permissive_peaks" => "storage/remap2022/dm6/MACS2/remap2022_all-permissive_macs2_dm6_v1_0.bed.gz"
          ]
          "mm10" => array:12 [
            "all" => "123.2 million"
            "merged" => "43.9 million"
            "crm" => "2.4 million"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2022/mm10/MACS2/remap2022_all_macs2_mm10_v1_0.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2022/mm10/MACS2/remap2022_nr_macs2_mm10_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2022/mm10/MACS2/remap2022_crm_macs2_mm10_v1_0.bed.gz"
            "allTF_dir" => "storage/remap2022/mm10/MACS2/TF"
            "fasta" => "storage/remap2022/mm10/MACS2/FASTA"
            "biotypes_tf" => "storage/remap2022/mm10/MACS2/BIOTYPE"
            "datasets" => "storage/remap2022/mm10/MACS2/DATASET"
            "biotypes" => "storage/remap2022/biotypes/remap2022_mmus_biotypes.xlsx"
            "permissive_peaks" => "storage/remap2022/mm10/MACS2/remap2022_all-permissive_macs2_mm10_v1_0.bed.gz"
          ]
          "mm39" => array:6 [
            "all" => "lifted"
            "merged" => "lifted"
            "crm" => "lifted"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2022/mm39/MACS2/remap2022_all_macs2_mm39_v1_0.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2022/mm39/MACS2/remap2022_nr_macs2_mm39_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2022/mm39/MACS2/remap2022_crm_macs2_mm39_v1_0.bed.gz"
          ]
          "hg38" => array:12 [
            "all" => "182.4 million"
            "merged" => "68.2 million"
            "crm" => "3.4 million"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_all_macs2_hg38_v1_0.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_nr_macs2_hg38_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/remap2022_crm_macs2_hg38_v1_0.bed.gz"
            "allTF_dir" => "storage/remap2022/hg38/MACS2/TF"
            "fasta" => "storage/remap2022/hg38/MACS2/FASTA"
            "biotypes_tf" => "storage/remap2022/hg38/MACS2/BIOTYPE"
            "datasets" => "storage/remap2022/hg38/MACS2/DATASET"
            "biotypes" => "storage/remap2022/biotypes/remap2022_hsap_biotypes.xlsx"
            "permissive_peaks" => "storage/remap2022/hg38/MACS2/remap2022_all-permissive_macs2_hg38_v1_0.bed.gz"
          ]
          "hg19" => array:8 [
            "all" => "lifted"
            "merged" => "lifted"
            "crm" => "lifted"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_all_macs2_hg19_v1_0.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_nr_macs2_hg19_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2022/hg19/MACS2/remap2022_crm_macs2_hg19_v1_0.bed.gz"
            "allTF_dir" => ""
            "fasta" => ""
          ]
          "TAIR10" => array:22 [
            "all_tf" => "4.8 million"
            "merged_tf" => "3.2 million"
            "all_histone" => "4.5 million"
            "merged_histone" => "1.3 million"
            "crm" => "233,380"
            "all_tf_bed" => "https://remap.univ-amu.fr/storage/remap2022/tair10/tf/MACS2/remap2022_all_macs2_TAIR10_v1_0.bed.gz"
            "merged_tf_bed" => "https://remap.univ-amu.fr/storage/remap2022/tair10/tf/MACS2/remap2022_nr_macs2_TAIR10_v1_0.bed.gz"
            "all_histone_bed" => "https://remap.univ-amu.fr/storage/remap2022/tair10/histones/MACS2/remap2022_histone_all_macs2_TAIR10_v1_0.bed.gz"
            "merged_histone_bed" => "https://remap.univ-amu.fr/storage/remap2022/tair10/histones/MACS2/remap2022_histone_nr_macs2_TAIR10_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2022/tair10/tf/MACS2/remap2022_crm_macs2_TAIR10_v1_0.bed.gz"
            "allTF_dir" => "storage/remap2022/tair10/tf/MACS2/TF"
            "allHistone_dir" => "storage/remap2020/tair10/histones/MACS2/HISTONE"
            "fasta" => "storage/remap2022/tair10/tf/MACS2/TF_FASTA/"
            "fasta_histone" => "storage/remap2020/tair10/histones/MACS2/HISTONE_FASTA/"
            "biotypes_tf" => "storage/remap2022/tair10/tf/MACS2/ECOTYPE_BIOTYPE"
            "crm_tf_ecotypes" => "storage/remap2022/tair10/tf/MACS2/ECOTYPE"
            "biotypes_histone" => "storage/remap2020/tair10/histones/MACS2/ECOTYPE_BIOTYPE"
            "datasets" => "storage/remap2022/tair10/tf/MACS2/DATASET"
            "new_nr_crm" => "storage/remap2022/tair10/tf/MACS2/BIOTYPE"
            "datasets_histone" => "storage/remap2020/tair10/histones/MACS2/DATASET"
            "biotypes" => "storage/remap2022/biotypes/remap2022_tair_biotypes.xlsx"
            "permissive_peaks" => "storage/remap2022/tair10/tf/MACS2/remap2022_all-permissive_macs2_TAIR10_v1_0.bed.gz"
          ]
          "TAIR9" => array:8 [
            "all" => ""
            "merged" => ""
            "crm" => ""
            "all_bed" => ""
            "merged_bed" => ""
            "crm_bed" => ""
            "allTF_dir" => ""
            "fasta" => ""
          ]
        ]
        2020 => array:4 [
          "hg38" => array:10 [
            "all" => "164,7 million"
            "merged" => "75 million"
            "crm" => "1,7 million"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2020/hg38/MACS2/remap2020_all_macs2_hg38_v1_0.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2020/hg38/MACS2/remap2020_nr_macs2_hg38_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2020/hg38/MACS2/remap2020_crm_macs2_hg38_v1_0.bed.gz"
            "allTF_dir" => "storage/remap2020/hg38/MACS2/TF"
            "fasta" => "storage/remap2020/hg38/MACS2/TF_FASTA/10.fasta_GOOD_MERGE"
            "biotypes_tf" => "storage/remap2020/hg38/MACS2/BIOTYPE"
            "datasets" => "storage/remap2020/hg38/MACS2/DATASET"
          ]
          "hg19" => array:8 [
            "all" => ""
            "merged" => ""
            "crm" => ""
            "all_bed" => ""
            "merged_bed" => ""
            "crm_bed" => ""
            "allTF_dir" => ""
            "fasta" => ""
          ]
          "TAIR10" => array:20 [
            "all_tf" => "2.6 million"
            "merged_tf" => "1.8 million"
            "all_histone" => "4.5 million"
            "merged_histone" => "1.3 million"
            "crm" => "50,993"
            "all_tf_bed" => "https://remap.univ-amu.fr/storage/remap2020/tair10/tf/MACS2/remap2020_all_macs2_TAIR10_v1_0.bed.gz"
            "merged_tf_bed" => "https://remap.univ-amu.fr/storage/remap2020/tair10/tf/MACS2/remap2020_nr_macs2_TAIR10_v1_0.bed.gz"
            "all_histone_bed" => "https://remap.univ-amu.fr/storage/remap2020/tair10/histones/MACS2/remap2020_histone_all_macs2_TAIR10_v1_0.bed.gz"
            "merged_histone_bed" => "https://remap.univ-amu.fr/storage/remap2020/tair10/histones/MACS2/remap2020_histone_nr_macs2_TAIR10_v1_0.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2020/tair10/tf/MACS2/remap2020_crm_macs2_TAIR10_v1_0.bed.gz"
            "allTF_dir" => "storage/remap2020/tair10/tf/MACS2/TF"
            "allHistone_dir" => "storage/remap2020/tair10/histones/MACS2/HISTONE"
            "fasta" => "storage/remap2020/tair10/tf/MACS2/TF_FASTA/"
            "fasta_histone" => "storage/remap2020/tair10/histones/MACS2/HISTONE_FASTA/"
            "biotypes_tf" => "storage/remap2020/tair10/tf/MACS2/ECOTYPE_BIOTYPE"
            "crm_tf_ecotypes" => "storage/remap2020/tair10/tf/MACS2/ECOTYPE"
            "biotypes_histone" => "storage/remap2020/tair10/histones/MACS2/ECOTYPE_BIOTYPE"
            "datasets" => "storage/remap2020/tair10/tf/MACS2/DATASET"
            "new_nr_crm" => "storage/remap2020/tair10/tf/MACS2/BIOTYPE"
            "datasets_histone" => "storage/remap2020/tair10/histones/MACS2/DATASET"
          ]
          "TAIR9" => array:8 [
            "all" => ""
            "merged" => ""
            "crm" => ""
            "all_bed" => ""
            "merged_bed" => ""
            "crm_bed" => ""
            "allTF_dir" => ""
            "fasta" => ""
          ]
        ]
        2018 => array:2 [
          "hg38" => array:10 [
            "all" => "80 million"
            "merged" => "35.5 million"
            "crm" => "1.6 million"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2018/hg38/MACS/remap2018_all_macs2_hg38_v1_2.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2018/hg38/MACS/remap2018_nr_macs2_hg38_v1_2.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2018/hg38/MACS/remap2018_crm_macs2_hg38_v1_2.bed.gz"
            "allTF_dir" => "storage/remap2018/hg38/MACS/all_tf"
            "fasta" => "storage/remap2018/hg38/MACS/fasta/all_tf"
            "datasets" => "storage/remap2018/hg38/MACS/dataset"
            "biotypes_tf" => "storage/remap2018/hg38/MACS/cell_line"
          ]
          "hg19" => array:9 [
            "all" => "80 million"
            "merged" => "35.5 million"
            "crm" => "1.6 million"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2018/hg19/MACS/remap2018_all_macs2_hg19_v1_2.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2018/hg19/MACS/remap2018_nr_macs2_hg19_v1_2.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2018/hg19/MACS/remap2018_crm_macs2_hg19_v1_2.bed.gz"
            "allTF_dir" => "storage/remap2018/hg19/MACS/all_tf"
            "fasta" => "storage/remap2018/hg19/MACS/fasta/all_tf"
            "biotypes_tf" => "storage/remap2018/hg19/MACS/cell_line"
          ]
        ]
        2015 => array:2 [
          "hg38" => array:6 [
            "all" => "13 million"
            "merged" => "8.8 million"
            "crm" => "0"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2015/hg38/MACS/remap2015_all_macs2_hg38_v1.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2015/hg38/MACS/remap2015_nr_macs2_hg38_v1.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2015"
          ]
          "hg19" => array:6 [
            "all" => "13 million"
            "merged" => "8.8 million"
            "crm" => "0"
            "all_bed" => "https://remap.univ-amu.fr/storage/remap2015/hg19/MACS/All/remap2015_all_macs2_hg19_v1.bed.gz"
            "merged_bed" => "https://remap.univ-amu.fr/storage/remap2015/hg19/MACS/All/remap2015_nr_macs2_hg19_v1.bed.gz"
            "crm_bed" => "https://remap.univ-amu.fr/storage/remap2015"
          ]
        ]
      ]
      "box_links" => array:3 [
        0 => "https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/BIOTYPE/AML/remap2022_AML_all_macs2_hg38_v1_0.bed.gz"
        1 => "https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/BIOTYPE/AML/remap2022_AML_nr_macs2_hg38_v1_0.bed.gz"
        2 => "https://remap.univ-amu.fr/storage/remap2022/hg38/MACS2/BIOTYPE/AML/remap2022_AML_crm_macs2_hg38_v1_0.bed.gz"
      ]
      "table_data" => array:1 [
        0 => array:8 [
          0 => "AML"
          8 => "FLAG_BI-7273"
          1 => null
          2 => "BRD9"
          3 => ""
          4 => "GEO"
          5 => "Mus musculus"
          6 => "<a href="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE79360">GSE79360</a>"
        ]
      ]
      "targets" => array:1 [
        "BRD9" => 1
      ]
      "i" => 0
      "biotype_modif" => "FLAG_BI-7273"
      "target" => "BRD9"
      "dataset" => "GSE79360"
      "peaks_dir" => "GSE79360.BRD9.AML_FLAG_BI-7273"
      "dataset_name" => "GSE79360.BRD9.AML_FLAG_BI-7273"
    ]
    
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Controller.php
    /**
     * Get the middleware assigned to the controller.
     *
     * @return array
     */
    public function getMiddleware()
    {
        return $this->middleware;
    }
 
    /**
     * Execute an action on the controller.
     *
     * @param  string  $method
     * @param  array   $parameters
     * @return \Symfony\Component\HttpFoundation\Response
     */
    public function callAction($method, $parameters)
    {
        return call_user_func_array([$this, $method], $parameters);
    }
 
    /**
     * Handle calls to missing methods on the controller.
     *
     * @param  string  $method
     * @param  array   $parameters
     * @return mixed
     *
     * @throws \BadMethodCallException
     */
    public function __call($method, $parameters)
    {
        throw new BadMethodCallException(sprintf(
            'Method %s::%s does not exist.', static::class, $method
        ));
    }
}
 
Arguments
  1. "AML"
    
  2. "9606"
    
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Controller.php
    /**
     * Get the middleware assigned to the controller.
     *
     * @return array
     */
    public function getMiddleware()
    {
        return $this->middleware;
    }
 
    /**
     * Execute an action on the controller.
     *
     * @param  string  $method
     * @param  array   $parameters
     * @return \Symfony\Component\HttpFoundation\Response
     */
    public function callAction($method, $parameters)
    {
        return call_user_func_array([$this, $method], $parameters);
    }
 
    /**
     * Handle calls to missing methods on the controller.
     *
     * @param  string  $method
     * @param  array   $parameters
     * @return mixed
     *
     * @throws \BadMethodCallException
     */
    public function __call($method, $parameters)
    {
        throw new BadMethodCallException(sprintf(
            'Method %s::%s does not exist.', static::class, $method
        ));
    }
}
 
Arguments
  1. array:2 [
      0 => SearchController {#264}
      1 => "OpenBiotypePage"
    ]
    
  2. array:2 [
      "biotype_name" => "AML"
      "tax_id" => "9606"
    ]
    
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ControllerDispatcher.php
    {
        $this->container = $container;
    }
 
    /**
     * Dispatch a request to a given controller and method.
     *
     * @param  \Illuminate\Routing\Route  $route
     * @param  mixed  $controller
     * @param  string  $method
     * @return mixed
     */
    public function dispatch(Route $route, $controller, $method)
    {
        $parameters = $this->resolveClassMethodDependencies(
            $route->parametersWithoutNulls(), $controller, $method
        );
 
        if (method_exists($controller, 'callAction')) {
            return $controller->callAction($method, $parameters);
        }
 
        return $controller->{$method}(...array_values($parameters));
    }
 
    /**
     * Get the middleware for the controller instance.
     *
     * @param  \Illuminate\Routing\Controller  $controller
     * @param  string  $method
     * @return array
     */
    public function getMiddleware($controller, $method)
    {
        if (! method_exists($controller, 'getMiddleware')) {
            return [];
        }
 
        return collect($controller->getMiddleware())->reject(function ($data) use ($method) {
            return static::methodExcludedByOptions($method, $data['options']);
Arguments
  1. "OpenBiotypePage"
    
  2. array:2 [
      "biotype_name" => "AML"
      "tax_id" => "9606"
    ]
    
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Route.php
    protected function runCallable()
    {
        $callable = $this->action['uses'];
 
        return $callable(...array_values($this->resolveMethodDependencies(
            $this->parametersWithoutNulls(), new ReflectionFunction($this->action['uses'])
        )));
    }
 
    /**
     * Run the route action and return the response.
     *
     * @return mixed
     *
     * @throws \Symfony\Component\HttpKernel\Exception\NotFoundHttpException
     */
    protected function runController()
    {
        return $this->controllerDispatcher()->dispatch(
            $this, $this->getController(), $this->getControllerMethod()
        );
    }
 
    /**
     * Get the controller instance for the route.
     *
     * @return mixed
     */
    public function getController()
    {
        if (! $this->controller) {
            $class = $this->parseControllerCallback()[0];
 
            $this->controller = $this->container->make(ltrim($class, '\\'));
        }
 
        return $this->controller;
    }
 
    /**
Arguments
  1. Route {#238}
    
  2. SearchController {#264}
    
  3. "OpenBiotypePage"
    
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Route.php
     *
     * @throws \UnexpectedValueException
     */
    protected function parseAction($action)
    {
        return RouteAction::parse($this->uri, $action);
    }
 
    /**
     * Run the route action and return the response.
     *
     * @return mixed
     */
    public function run()
    {
        $this->container = $this->container ?: new Container;
 
        try {
            if ($this->isControllerAction()) {
                return $this->runController();
            }
 
            return $this->runCallable();
        } catch (HttpResponseException $e) {
            return $e->getResponse();
        }
    }
 
    /**
     * Checks whether the route's action is a controller.
     *
     * @return bool
     */
    protected function isControllerAction()
    {
        return is_string($this->action['uses']);
    }
 
    /**
     * Run the route action and return the response.
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Router.php
    /**
     * Run the given route within a Stack "onion" instance.
     *
     * @param  \Illuminate\Routing\Route  $route
     * @param  \Illuminate\Http\Request  $request
     * @return mixed
     */
    protected function runRouteWithinStack(Route $route, Request $request)
    {
        $shouldSkipMiddleware = $this->container->bound('middleware.disable') &&
                                $this->container->make('middleware.disable') === true;
 
        $middleware = $shouldSkipMiddleware ? [] : $this->gatherRouteMiddleware($route);
 
        return (new Pipeline($this->container))
                        ->send($request)
                        ->through($middleware)
                        ->then(function ($request) use ($route) {
                            return $this->prepareResponse(
                                $request, $route->run()
                            );
                        });
    }
 
    /**
     * Gather the middleware for the given route with resolved class names.
     *
     * @param  \Illuminate\Routing\Route  $route
     * @return array
     */
    public function gatherRouteMiddleware(Route $route)
    {
        $middleware = collect($route->gatherMiddleware())->map(function ($name) {
            return (array) MiddlewareNameResolver::resolve($name, $this->middleware, $this->middlewareGroups);
        })->flatten();
 
        return $this->sortMiddleware($middleware);
    }
 
    /**
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Pipeline.php
use Symfony\Component\Debug\Exception\FatalThrowableError;
 
/**
 * This extended pipeline catches any exceptions that occur during each slice.
 *
 * The exceptions are converted to HTTP responses for proper middleware handling.
 */
class Pipeline extends BasePipeline
{
    /**
     * Get the final piece of the Closure onion.
     *
     * @param  \Closure  $destination
     * @return \Closure
     */
    protected function prepareDestination(Closure $destination)
    {
        return function ($passable) use ($destination) {
            try {
                return $destination($passable);
            } catch (Exception $e) {
                return $this->handleException($passable, $e);
            } catch (Throwable $e) {
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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SubstituteBindings.php
     */
    public function __construct(Registrar $router)
    {
        $this->router = $router;
    }
 
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return mixed
     */
    public function handle($request, Closure $next)
    {
        $this->router->substituteBindings($route = $request->route());
 
        $this->router->substituteImplicitBindings($route);
 
        return $next($request);
    }
}
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#274 …6}
    
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Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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VerifyCsrfToken.php
    }
 
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return mixed
     *
     * @throws \Illuminate\Session\TokenMismatchException
     */
    public function handle($request, Closure $next)
    {
        if (
            $this->isReading($request) ||
            $this->runningUnitTests() ||
            $this->inExceptArray($request) ||
            $this->tokensMatch($request)
        ) {
            return tap($next($request), function ($response) use ($request) {
                if ($this->shouldAddXsrfTokenCookie()) {
                    $this->addCookieToResponse($request, $response);
                }
            });
        }
 
        throw new TokenMismatchException;
    }
 
    /**
     * Determine if the HTTP request uses a ‘read’ verb.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return bool
     */
    protected function isReading($request)
    {
        return in_array($request->method(), ['HEAD', 'GET', 'OPTIONS']);
    }
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#343 …6}
    
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Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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View
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Middleware
/
ShareErrorsFromSession.php
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return mixed
     */
    public function handle($request, Closure $next)
    {
        // If the current session has an "errors" variable bound to it, we will share
        // its value with all view instances so the views can easily access errors
        // without having to bind. An empty bag is set when there aren't errors.
        $this->view->share(
            'errors', $request->session()->get('errors') ?: new ViewErrorBag
        );
 
        // Putting the errors in the view for every view allows the developer to just
        // assume that some errors are always available, which is convenient since
        // they don't have to continually run checks for the presence of errors.
 
        return $next($request);
    }
}
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#344 …6}
    
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Illuminate
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Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
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local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Session
/
Middleware
/
StartSession.php
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return mixed
     */
    public function handle($request, Closure $next)
    {
        $this->sessionHandled = true;
 
        // If a session driver has been configured, we will need to start the session here
        // so that the data is ready for an application. Note that the Laravel sessions
        // do not make use of PHP "native" sessions in any way since they are crappy.
        if ($this->sessionConfigured()) {
            $request->setLaravelSession(
                $session = $this->startSession($request)
            );
 
            $this->collectGarbage($session);
        }
 
        $response = $next($request);
 
        // Again, if the session has been configured we will need to close out the session
        // so that the attributes may be persisted to some storage medium. We will also
        // add the session identifier cookie to the application response headers now.
        if ($this->sessionConfigured()) {
            $this->storeCurrentUrl($request, $session);
 
            $this->addCookieToResponse($response, $session);
        }
 
        return $response;
    }
 
    /**
     * Perform any final actions for the request lifecycle.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Symfony\Component\HttpFoundation\Response  $response
     * @return void
     */
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
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local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#345 …6}
    
/
usr
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local
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apache2
/
htdocs
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remap-web2022
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Cookie
/
Middleware
/
AddQueuedCookiesToResponse.php
     * Create a new CookieQueue instance.
     *
     * @param  \Illuminate\Contracts\Cookie\QueueingFactory  $cookies
     * @return void
     */
    public function __construct(CookieJar $cookies)
    {
        $this->cookies = $cookies;
    }
 
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return mixed
     */
    public function handle($request, Closure $next)
    {
        $response = $next($request);
 
        foreach ($this->cookies->getQueuedCookies() as $cookie) {
            $response->headers->setCookie($cookie);
        }
 
        return $response;
    }
}
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#346 …6}
    
/
usr
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htdocs
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remap-web2022
/
vendor
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laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Cookie
/
Middleware
/
EncryptCookies.php
     * Disable encryption for the given cookie name(s).
     *
     * @param  string|array  $name
     * @return void
     */
    public function disableFor($name)
    {
        $this->except = array_merge($this->except, (array) $name);
    }
 
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return \Symfony\Component\HttpFoundation\Response
     */
    public function handle($request, Closure $next)
    {
        return $this->encrypt($next($this->decrypt($request)));
    }
 
    /**
     * Decrypt the cookies on the request.
     *
     * @param  \Symfony\Component\HttpFoundation\Request  $request
     * @return \Symfony\Component\HttpFoundation\Request
     */
    protected function decrypt(Request $request)
    {
        foreach ($request->cookies as $key => $cookie) {
            if ($this->isDisabled($key)) {
                continue;
            }
 
            try {
                $request->cookies->set($key, $this->decryptCookie($key, $cookie));
            } catch (DecryptException $e) {
                $request->cookies->set($key, null);
            }
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#347 …6}
    
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Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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framework
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src
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Illuminate
/
Pipeline
/
Pipeline.php
    public function via($method)
    {
        $this->method = $method;
 
        return $this;
    }
 
    /**
     * Run the pipeline with a final destination callback.
     *
     * @param  \Closure  $destination
     * @return mixed
     */
    public function then(Closure $destination)
    {
        $pipeline = array_reduce(
            array_reverse($this->pipes), $this->carry(), $this->prepareDestination($destination)
        );
 
        return $pipeline($this->passable);
    }
 
    /**
     * Get the final piece of the Closure onion.
     *
     * @param  \Closure  $destination
     * @return \Closure
     */
    protected function prepareDestination(Closure $destination)
    {
        return function ($passable) use ($destination) {
            return $destination($passable);
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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vendor
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laravel
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framework
/
src
/
Illuminate
/
Routing
/
Router.php
     *
     * @param  \Illuminate\Routing\Route  $route
     * @param  \Illuminate\Http\Request  $request
     * @return mixed
     */
    protected function runRouteWithinStack(Route $route, Request $request)
    {
        $shouldSkipMiddleware = $this->container->bound('middleware.disable') &&
                                $this->container->make('middleware.disable') === true;
 
        $middleware = $shouldSkipMiddleware ? [] : $this->gatherRouteMiddleware($route);
 
        return (new Pipeline($this->container))
                        ->send($request)
                        ->through($middleware)
                        ->then(function ($request) use ($route) {
                            return $this->prepareResponse(
                                $request, $route->run()
                            );
                        });
    }
 
    /**
     * Gather the middleware for the given route with resolved class names.
     *
     * @param  \Illuminate\Routing\Route  $route
     * @return array
     */
    public function gatherRouteMiddleware(Route $route)
    {
        $middleware = collect($route->gatherMiddleware())->map(function ($name) {
            return (array) MiddlewareNameResolver::resolve($name, $this->middleware, $this->middlewareGroups);
        })->flatten();
 
        return $this->sortMiddleware($middleware);
    }
 
    /**
     * Sort the given middleware by priority.
     *
Arguments
  1. Closure($request) {#273 …6}
    
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Router.php
        return $route;
    }
 
    /**
     * Return the response for the given route.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Illuminate\Routing\Route  $route
     * @return mixed
     */
    protected function runRoute(Request $request, Route $route)
    {
        $request->setRouteResolver(function () use ($route) {
            return $route;
        });
 
        $this->events->dispatch(new Events\RouteMatched($route, $request));
 
        return $this->prepareResponse($request,
            $this->runRouteWithinStack($route, $request)
        );
    }
 
    /**
     * Run the given route within a Stack "onion" instance.
     *
     * @param  \Illuminate\Routing\Route  $route
     * @param  \Illuminate\Http\Request  $request
     * @return mixed
     */
    protected function runRouteWithinStack(Route $route, Request $request)
    {
        $shouldSkipMiddleware = $this->container->bound('middleware.disable') &&
                                $this->container->make('middleware.disable') === true;
 
        $middleware = $shouldSkipMiddleware ? [] : $this->gatherRouteMiddleware($route);
 
        return (new Pipeline($this->container))
                        ->send($request)
                        ->through($middleware)
Arguments
  1. Route {#238}
    
  2. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
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src
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Illuminate
/
Routing
/
Router.php
     *
     * @param  \Illuminate\Http\Request  $request
     * @return \Illuminate\Http\Response|\Illuminate\Http\JsonResponse
     */
    public function dispatch(Request $request)
    {
        $this->currentRequest = $request;
 
        return $this->dispatchToRoute($request);
    }
 
    /**
     * Dispatch the request to a route and return the response.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return mixed
     */
    public function dispatchToRoute(Request $request)
    {
        return $this->runRoute($request, $this->findRoute($request));
    }
 
    /**
     * Find the route matching a given request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return \Illuminate\Routing\Route
     */
    protected function findRoute($request)
    {
        $this->current = $route = $this->routes->match($request);
 
        $this->container->instance(Route::class, $route);
 
        return $route;
    }
 
    /**
     * Return the response for the given route.
     *
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Route {#238}
    
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Routing
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Router.php
     * @return mixed
     */
    public function respondWithRoute($name)
    {
        $route = tap($this->routes->getByName($name))->bind($this->currentRequest);
 
        return $this->runRoute($this->currentRequest, $route);
    }
 
    /**
     * Dispatch the request to the application.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return \Illuminate\Http\Response|\Illuminate\Http\JsonResponse
     */
    public function dispatch(Request $request)
    {
        $this->currentRequest = $request;
 
        return $this->dispatchToRoute($request);
    }
 
    /**
     * Dispatch the request to a route and return the response.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return mixed
     */
    public function dispatchToRoute(Request $request)
    {
        return $this->runRoute($request, $this->findRoute($request));
    }
 
    /**
     * Find the route matching a given request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return \Illuminate\Routing\Route
     */
    protected function findRoute($request)
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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framework
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src
/
Illuminate
/
Foundation
/
Http
/
Kernel.php
     * @return void
     */
    public function bootstrap()
    {
        if (! $this->app->hasBeenBootstrapped()) {
            $this->app->bootstrapWith($this->bootstrappers());
        }
    }
 
    /**
     * Get the route dispatcher callback.
     *
     * @return \Closure
     */
    protected function dispatchToRouter()
    {
        return function ($request) {
            $this->app->instance('request', $request);
 
            return $this->router->dispatch($request);
        };
    }
 
    /**
     * Call the terminate method on any terminable middleware.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Illuminate\Http\Response  $response
     * @return void
     */
    public function terminate($request, $response)
    {
        $this->terminateMiddleware($request, $response);
 
        $this->app->terminate();
    }
 
    /**
     * Call the terminate method on any terminable middleware.
     *
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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htdocs
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vendor
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framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
use Symfony\Component\Debug\Exception\FatalThrowableError;
 
/**
 * This extended pipeline catches any exceptions that occur during each slice.
 *
 * The exceptions are converted to HTTP responses for proper middleware handling.
 */
class Pipeline extends BasePipeline
{
    /**
     * Get the final piece of the Closure onion.
     *
     * @param  \Closure  $destination
     * @return \Closure
     */
    protected function prepareDestination(Closure $destination)
    {
        return function ($passable) use ($destination) {
            try {
                return $destination($passable);
            } catch (Exception $e) {
                return $this->handleException($passable, $e);
            } catch (Throwable $e) {
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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remap-web2022
/
app
/
Http
/
Middleware
/
Cors.php
<?php
 
namespace App\Http\Middleware;
 
use Closure;
 
class Cors
{
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return mixed
     */
    public function handle($request, Closure $next)
    {
    return $next($request)
    ->header('Access-Control-Allow-Origin', '*')
        ->header('Access-Control-Allow-Methods', 'GET, POST, PUT, DELETE, OPTIONS')
        ->header('Access-Control-Allow-Headers', 'X-Requested-With, Content-Type, X-Token-Auth, Authorization');
    }
}
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
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vendor
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framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#133 …6}
    
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Routing
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Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
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htdocs
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remap-web2022
/
vendor
/
fideloper
/
proxy
/
src
/
TrustProxies.php
    {
        $this->config = $config;
    }
 
    /**
     * Handle an incoming request.
     *
     * @param \Illuminate\Http\Request $request
     * @param \Closure                 $next
     *
     * @throws \Symfony\Component\HttpKernel\Exception\HttpException
     *
     * @return mixed
     */
    public function handle(Request $request, Closure $next)
    {
        $request::setTrustedProxies([], $this->getTrustedHeaderNames()); // Reset trusted proxies between requests
        $this->setTrustedProxyIpAddresses($request);
 
        return $next($request);
    }
 
    /**
     * Sets the trusted proxies on the request to the value of trustedproxy.proxies
     *
     * @param \Illuminate\Http\Request $request
     */
    protected function setTrustedProxyIpAddresses(Request $request)
    {
        $trustedIps = $this->proxies ?: $this->config->get('trustedproxy.proxies');
 
        // Trust any IP address that calls us
        // `**` for backwards compatibility, but is deprecated
        if ($trustedIps === '*' || $trustedIps === '**') {
            return $this->setTrustedProxyIpAddressesToTheCallingIp($request);
        }
 
        // Support IPs addresses separated by comma
        $trustedIps = is_string($trustedIps) ? array_map('trim', explode(',', $trustedIps)) : $trustedIps;
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
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local
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apache2
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htdocs
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remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#240 …6}
    
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framework
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src
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Illuminate
/
Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
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local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Middleware
/
TransformsRequest.php
     *
     * @var array
     */
    protected $attributes = [];
 
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @param  array  ...$attributes
     * @return mixed
     */
    public function handle($request, Closure $next, ...$attributes)
    {
        $this->attributes = $attributes;
 
        $this->clean($request);
 
        return $next($request);
    }
 
    /**
     * Clean the request's data.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return void
     */
    protected function clean($request)
    {
        $this->cleanParameterBag($request->query);
 
        if ($request->isJson()) {
            $this->cleanParameterBag($request->json());
        } elseif ($request->request !== $request->query) {
            $this->cleanParameterBag($request->request);
        }
    }
 
    /**
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
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local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#241 …6}
    
/
usr
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local
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htdocs
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remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Middleware
/
TransformsRequest.php
     *
     * @var array
     */
    protected $attributes = [];
 
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @param  array  ...$attributes
     * @return mixed
     */
    public function handle($request, Closure $next, ...$attributes)
    {
        $this->attributes = $attributes;
 
        $this->clean($request);
 
        return $next($request);
    }
 
    /**
     * Clean the request's data.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return void
     */
    protected function clean($request)
    {
        $this->cleanParameterBag($request->query);
 
        if ($request->isJson()) {
            $this->cleanParameterBag($request->json());
        } elseif ($request->request !== $request->query) {
            $this->cleanParameterBag($request->request);
        }
    }
 
    /**
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#242 …6}
    
/
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vendor
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laravel
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framework
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src
/
Illuminate
/
Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Middleware
/
ValidatePostSize.php
class ValidatePostSize
{
    /**
     * Handle an incoming request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @param  \Closure  $next
     * @return mixed
     *
     * @throws \Illuminate\Http\Exceptions\PostTooLargeException
     */
    public function handle($request, Closure $next)
    {
        $max = $this->getPostMaxSize();
 
        if ($max > 0 && $request->server('CONTENT_LENGTH') > $max) {
            throw new PostTooLargeException;
        }
 
        return $next($request);
    }
 
    /**
     * Determine the server 'post_max_size' as bytes.
     *
     * @return int
     */
    protected function getPostMaxSize()
    {
        if (is_numeric($postMaxSize = ini_get('post_max_size'))) {
            return (int) $postMaxSize;
        }
 
        $metric = strtoupper(substr($postMaxSize, -1));
        $postMaxSize = (int) $postMaxSize;
 
        switch ($metric) {
            case 'K':
                return $postMaxSize * 1024;
            case 'M':
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#243 …6}
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Middleware
/
CheckForMaintenanceMode.php
     *
     * @throws \Symfony\Component\HttpKernel\Exception\HttpException
     */
    public function handle($request, Closure $next)
    {
        if ($this->app->isDownForMaintenance()) {
            $data = json_decode(file_get_contents($this->app->storagePath().'/framework/down'), true);
 
            if (isset($data['allowed']) && IpUtils::checkIp($request->ip(), (array) $data['allowed'])) {
                return $next($request);
            }
 
            if ($this->inExceptArray($request)) {
                return $next($request);
            }
 
            throw new MaintenanceModeException($data['time'], $data['retry'], $data['message']);
        }
 
        return $next($request);
    }
 
    /**
     * Determine if the request has a URI that should be accessible in maintenance mode.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return bool
     */
    protected function inExceptArray($request)
    {
        foreach ($this->except as $except) {
            if ($except !== '/') {
                $except = trim($except, '/');
            }
 
            if ($request->fullUrlIs($except) || $request->is($except)) {
                return true;
            }
        }
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
                    // the appropriate method and arguments, returning the results back out.
                    return $pipe($passable, $stack);
                } elseif (! is_object($pipe)) {
                    [$name, $parameters] = $this->parsePipeString($pipe);
 
                    // If the pipe is a string we will parse the string and resolve the class out
                    // of the dependency injection container. We can then build a callable and
                    // execute the pipe function giving in the parameters that are required.
                    $pipe = $this->getContainer()->make($name);
 
                    $parameters = array_merge([$passable, $stack], $parameters);
                } else {
                    // If the pipe is already an object we'll just make a callable and pass it to
                    // the pipe as-is. There is no need to do any extra parsing and formatting
                    // since the object we're given was already a fully instantiated object.
                    $parameters = [$passable, $stack];
                }
 
                $response = method_exists($pipe, $this->method)
                                ? $pipe->{$this->method}(...$parameters)
                                : $pipe(...$parameters);
 
                return $response instanceof Responsable
                            ? $response->toResponse($this->container->make(Request::class))
                            : $response;
            };
        };
    }
 
    /**
     * Parse full pipe string to get name and parameters.
     *
     * @param  string $pipe
     * @return array
     */
    protected function parsePipeString($pipe)
    {
        [$name, $parameters] = array_pad(explode(':', $pipe, 2), 2, []);
 
        if (is_string($parameters)) {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
  2. Closure($passable) {#244 …6}
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Routing
/
Pipeline.php
                return $this->handleException($passable, new FatalThrowableError($e));
            }
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
    protected function carry()
    {
        return function ($stack, $pipe) {
            return function ($passable) use ($stack, $pipe) {
                try {
                    $slice = parent::carry();
 
                    $callable = $slice($stack, $pipe);
 
                    return $callable($passable);
                } catch (Exception $e) {
                    return $this->handleException($passable, $e);
                } catch (Throwable $e) {
                    return $this->handleException($passable, new FatalThrowableError($e));
                }
            };
        };
    }
 
    /**
     * Handle the given exception.
     *
     * @param  mixed  $passable
     * @param  \Exception  $e
     * @return mixed
     *
     * @throws \Exception
     */
    protected function handleException($passable, Exception $e)
    {
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Pipeline
/
Pipeline.php
    public function via($method)
    {
        $this->method = $method;
 
        return $this;
    }
 
    /**
     * Run the pipeline with a final destination callback.
     *
     * @param  \Closure  $destination
     * @return mixed
     */
    public function then(Closure $destination)
    {
        $pipeline = array_reduce(
            array_reverse($this->pipes), $this->carry(), $this->prepareDestination($destination)
        );
 
        return $pipeline($this->passable);
    }
 
    /**
     * Get the final piece of the Closure onion.
     *
     * @param  \Closure  $destination
     * @return \Closure
     */
    protected function prepareDestination(Closure $destination)
    {
        return function ($passable) use ($destination) {
            return $destination($passable);
        };
    }
 
    /**
     * Get a Closure that represents a slice of the application onion.
     *
     * @return \Closure
     */
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Kernel.php
    }
 
    /**
     * Send the given request through the middleware / router.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return \Illuminate\Http\Response
     */
    protected function sendRequestThroughRouter($request)
    {
        $this->app->instance('request', $request);
 
        Facade::clearResolvedInstance('request');
 
        $this->bootstrap();
 
        return (new Pipeline($this->app))
                    ->send($request)
                    ->through($this->app->shouldSkipMiddleware() ? [] : $this->middleware)
                    ->then($this->dispatchToRouter());
    }
 
    /**
     * Bootstrap the application for HTTP requests.
     *
     * @return void
     */
    public function bootstrap()
    {
        if (! $this->app->hasBeenBootstrapped()) {
            $this->app->bootstrapWith($this->bootstrappers());
        }
    }
 
    /**
     * Get the route dispatcher callback.
     *
     * @return \Closure
     */
    protected function dispatchToRouter()
Arguments
  1. Closure($request) {#22 …5}
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
vendor
/
laravel
/
framework
/
src
/
Illuminate
/
Foundation
/
Http
/
Kernel.php
            $router->middlewareGroup($key, $middleware);
        }
 
        foreach ($this->routeMiddleware as $key => $middleware) {
            $router->aliasMiddleware($key, $middleware);
        }
    }
 
    /**
     * Handle an incoming HTTP request.
     *
     * @param  \Illuminate\Http\Request  $request
     * @return \Illuminate\Http\Response
     */
    public function handle($request)
    {
        try {
            $request->enableHttpMethodParameterOverride();
 
            $response = $this->sendRequestThroughRouter($request);
        } catch (Exception $e) {
            $this->reportException($e);
 
            $response = $this->renderException($request, $e);
        } catch (Throwable $e) {
            $this->reportException($e = new FatalThrowableError($e));
 
            $response = $this->renderException($request, $e);
        }
 
        $this->app['events']->dispatch(
            new Events\RequestHandled($request, $response)
        );
 
        return $response;
    }
 
    /**
     * Send the given request through the middleware / router.
     *
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    
/
usr
/
local
/
apache2
/
htdocs
/
remap-web2022
/
public
/
index.php
*/
 
$app = require_once __DIR__.'/../bootstrap/app.php';
 
/*
|--------------------------------------------------------------------------
| Run The Application
|--------------------------------------------------------------------------
|
| Once we have the application, we can handle the incoming request
| through the kernel, and send the associated response back to
| the client's browser allowing them to enjoy the creative
| and wonderful application we have prepared for them.
|
*/
 
$kernel = $app->make(Illuminate\Contracts\Http\Kernel::class);
 
$response = $kernel->handle(
    $request = Illuminate\Http\Request::capture()
);
 
$response->send();
 
$kernel->terminate($request, $response);
 
Arguments
  1. Request {#42
      #json: null
      #convertedFiles: null
      #userResolver: Closure($guard = null) {#258 …6}
      #routeResolver: Closure() {#266 …5}
      +attributes: ParameterBag {#44}
      +request: ParameterBag {#50}
      +query: ParameterBag {#50}
      +server: ServerBag {#46}
      +files: FileBag {#47}
      +cookies: ParameterBag {#45}
      +headers: HeaderBag {#48}
      #content: null
      #languages: null
      #charsets: null
      #encodings: null
      #acceptableContentTypes: array:1 [
        0 => "*/*"
      ]
      #pathInfo: "/biotype_page/AML:9606"
      #requestUri: "/biotype_page/AML:9606"
      #baseUrl: ""
      #basePath: null
      #method: "GET"
      #format: null
      #session: Store {#359}
      #locale: null
      #defaultLocale: "en"
      -isHostValid: true
      -isForwardedValid: true
      basePath: ""
      format: "html"
    }
    

Environment & details:

empty
empty
empty
empty
empty
Key Value
PHP_EXTRA_CONFIGURE_ARGS
"--enable-fpm --with-fpm-user=www-data --with-fpm-group=www-data --disable-cgi"
HOSTNAME
"729e9f2bc654"
PHP_INI_DIR
"/usr/local/etc/php"
HOME
"/var/www"
PHP_LDFLAGS
"-Wl,-O1 -Wl,--hash-style=both -pie"
PHP_CFLAGS
"-fstack-protector-strong -fpic -fpie -O2"
PHP_MD5
""
PHP_VERSION
"7.2.16"
GPG_KEYS
"1729F83938DA44E27BA0F4D3DBDB397470D12172 B1B44D8F021E4E2D6021E995DC9FF8D3EE5AF27F"
PHP_CPPFLAGS
"-fstack-protector-strong -fpic -fpie -O2"
PHP_ASC_URL
"https://secure.php.net/get/php-7.2.16.tar.xz.asc/from/this/mirror"
PHP_URL
"https://secure.php.net/get/php-7.2.16.tar.xz/from/this/mirror"
PATH
"/usr/local/apache2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
PHPIZE_DEPS
"autoconf \t\tdpkg-dev \t\tfile \t\tg++ \t\tgcc \t\tlibc-dev \t\tmake \t\tpkg-config \t\tre2c"
PWD
"/var/www/html"
PHP_SHA256
"7d91ed3c1447c6358a3d53f84599ef854aca4c3622de7435e2df115bf196e482"
USER
"www-data"
SCRIPT_NAME
"/index.php"
REQUEST_URI
"/biotype_page/AML:9606"
QUERY_STRING
""
REQUEST_METHOD
"GET"
SERVER_PROTOCOL
"HTTP/1.1"
GATEWAY_INTERFACE
"CGI/1.1"
REDIRECT_URL
"/biotype_page/AML:9606"
REMOTE_PORT
"47184"
SCRIPT_FILENAME
"/usr/local/apache2/htdocs/remap-web2022/public/index.php"
SERVER_ADMIN
"fabrice.lopez@inserm.fr"
CONTEXT_DOCUMENT_ROOT
"/usr/local/apache2/htdocs/remap-web2022/public"
CONTEXT_PREFIX
""
REQUEST_SCHEME
"http"
DOCUMENT_ROOT
"/usr/local/apache2/htdocs/remap-web2022/public"
REMOTE_ADDR
"172.22.0.1"
SERVER_PORT
"802"
SERVER_ADDR
"172.22.0.5"
SERVER_NAME
"remap.univ-amu.fr"
SERVER_SOFTWARE
"Apache/2.4.38 (Unix)"
SERVER_SIGNATURE
""
HTTP_ACCEPT_ENCODING
"gzip"
HTTP_X_FORWARDED_PROTO
"https"
HTTP_X_FORWARDED_FOR
"54.82.20.97"
HTTP_ACCEPT
"*/*"
HTTP_USER_AGENT
"claudebot"
HTTP_HOST
"remap.univ-amu.fr"
proxy-nokeepalive
"1"
REDIRECT_STATUS
"200"
FCGI_ROLE
"RESPONDER"
PHP_SELF
"/index.php"
REQUEST_TIME_FLOAT
1711693676.9418
REQUEST_TIME
1711693676
argv
[]
argc
0
APP_NAME
"Laravel"
APP_ENV
"local"
APP_KEY
"base64:jWGk+oI6V9lZt2J80hQK3P5HecC2Yzhk3UofJJkA+ag="
APP_DEBUG
"true"
APP_URL
"http://localhost"
LOG_CHANNEL
"stack"
DB_CONNECTION
"mysql"
DB_HOST
"mysql-2022"
DB_PORT
"3306"
DB_DATABASE
"remap2022_db"
DB_USERNAME
"root"
DB_PASSWORD
".reroot."
BROADCAST_DRIVER
"log"
CACHE_DRIVER
"file"
QUEUE_CONNECTION
"sync"
SESSION_DRIVER
"file"
SESSION_LIFETIME
"120"
REDIS_HOST
"127.0.0.1"
REDIS_PASSWORD
"null"
REDIS_PORT
"6379"
MAIL_DRIVER
"smtp"
MAIL_HOST
"smtp.mailtrap.io"
MAIL_PORT
"2525"
MAIL_USERNAME
"null"
MAIL_PASSWORD
"null"
MAIL_ENCRYPTION
"null"
PUSHER_APP_ID
""
PUSHER_APP_KEY
""
PUSHER_APP_SECRET
""
PUSHER_APP_CLUSTER
"mt1"
MIX_PUSHER_APP_KEY
""
MIX_PUSHER_APP_CLUSTER
"mt1"
ASSET_URL
"https://remap.univ-amu.fr"
Key Value
PHP_EXTRA_CONFIGURE_ARGS
"--enable-fpm --with-fpm-user=www-data --with-fpm-group=www-data --disable-cgi"
HOSTNAME
"729e9f2bc654"
PHP_INI_DIR
"/usr/local/etc/php"
HOME
"/var/www"
PHP_LDFLAGS
"-Wl,-O1 -Wl,--hash-style=both -pie"
PHP_CFLAGS
"-fstack-protector-strong -fpic -fpie -O2"
PHP_MD5
""
PHP_VERSION
"7.2.16"
GPG_KEYS
"1729F83938DA44E27BA0F4D3DBDB397470D12172 B1B44D8F021E4E2D6021E995DC9FF8D3EE5AF27F"
PHP_CPPFLAGS
"-fstack-protector-strong -fpic -fpie -O2"
PHP_ASC_URL
"https://secure.php.net/get/php-7.2.16.tar.xz.asc/from/this/mirror"
PHP_URL
"https://secure.php.net/get/php-7.2.16.tar.xz/from/this/mirror"
PATH
"/usr/local/apache2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
PHPIZE_DEPS
"autoconf \t\tdpkg-dev \t\tfile \t\tg++ \t\tgcc \t\tlibc-dev \t\tmake \t\tpkg-config \t\tre2c"
PWD
"/var/www/html"
PHP_SHA256
"7d91ed3c1447c6358a3d53f84599ef854aca4c3622de7435e2df115bf196e482"
USER
"www-data"
SCRIPT_NAME
"/index.php"
REQUEST_URI
"/biotype_page/AML:9606"
QUERY_STRING
""
REQUEST_METHOD
"GET"
SERVER_PROTOCOL
"HTTP/1.1"
GATEWAY_INTERFACE
"CGI/1.1"
REDIRECT_URL
"/biotype_page/AML:9606"
REMOTE_PORT
"47184"
SCRIPT_FILENAME
"/usr/local/apache2/htdocs/remap-web2022/public/index.php"
SERVER_ADMIN
"fabrice.lopez@inserm.fr"
CONTEXT_DOCUMENT_ROOT
"/usr/local/apache2/htdocs/remap-web2022/public"
CONTEXT_PREFIX
""
REQUEST_SCHEME
"http"
DOCUMENT_ROOT
"/usr/local/apache2/htdocs/remap-web2022/public"
REMOTE_ADDR
"172.22.0.1"
SERVER_PORT
"802"
SERVER_ADDR
"172.22.0.5"
SERVER_NAME
"remap.univ-amu.fr"
SERVER_SOFTWARE
"Apache/2.4.38 (Unix)"
SERVER_SIGNATURE
""
HTTP_ACCEPT_ENCODING
"gzip"
HTTP_X_FORWARDED_PROTO
"https"
HTTP_X_FORWARDED_FOR
"54.82.20.97"
HTTP_ACCEPT
"*/*"
HTTP_USER_AGENT
"claudebot"
HTTP_HOST
"remap.univ-amu.fr"
proxy-nokeepalive
"1"
REDIRECT_STATUS
"200"
FCGI_ROLE
"RESPONDER"
PHP_SELF
"/index.php"
REQUEST_TIME_FLOAT
1711693676.9418
REQUEST_TIME
1711693676
argv
[]
argc
0
APP_NAME
"Laravel"
APP_ENV
"local"
APP_KEY
"base64:jWGk+oI6V9lZt2J80hQK3P5HecC2Yzhk3UofJJkA+ag="
APP_DEBUG
"true"
APP_URL
"http://localhost"
LOG_CHANNEL
"stack"
DB_CONNECTION
"mysql"
DB_HOST
"mysql-2022"
DB_PORT
"3306"
DB_DATABASE
"remap2022_db"
DB_USERNAME
"root"
DB_PASSWORD
".reroot."
BROADCAST_DRIVER
"log"
CACHE_DRIVER
"file"
QUEUE_CONNECTION
"sync"
SESSION_DRIVER
"file"
SESSION_LIFETIME
"120"
REDIS_HOST
"127.0.0.1"
REDIS_PASSWORD
"null"
REDIS_PORT
"6379"
MAIL_DRIVER
"smtp"
MAIL_HOST
"smtp.mailtrap.io"
MAIL_PORT
"2525"
MAIL_USERNAME
"null"
MAIL_PASSWORD
"null"
MAIL_ENCRYPTION
"null"
PUSHER_APP_ID
""
PUSHER_APP_KEY
""
PUSHER_APP_SECRET
""
PUSHER_APP_CLUSTER
"mt1"
MIX_PUSHER_APP_KEY
""
MIX_PUSHER_APP_CLUSTER
"mt1"
ASSET_URL
"https://remap.univ-amu.fr"
0. Whoops\Handler\PrettyPageHandler