AFF4

Information AFF4

Description

Key component of the super elongation complex (SEC), a complex required to increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA. In the SEC complex, AFF4 acts as a central scaffold that recruits other factors through direct interactions with ELL proteins (ELL, ELL2 or ELL3) and the P-TEFb complex. In case of infection by HIV-1 virus, the SEC complex is recruited by the viral Tat protein to stimulate viral gene expression (By similarity). {ECO:0000250}.(Source UnitProtKB).

Full Name

AF4/FMR2 family, member 4

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
4
Biotypes
2
Peaks
36,492
Non-redundant peaks
22,742

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
93736
Official Gene Name
Aff4
JASPAR
MGI
MGI:2136171
Ensembl
ENSMUSG00000049470
UniProt
Q9ESC8
Genevisible
Q9ESC8
RefSeq
NM_033565
Aliases
Alf4; Laf4l
All peaks AFF4
Download BED file
Non redundant peaks AFF4
Download BED file
SEQUENCES AFF4
Download FASTA file
DOWNLOAD All ReMap
Got to catalogue

Datasets Table for AFF4

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
AFF4 Th1 GEO Mus musculus GSE62482 11,868
AFF4 Th1 TBX21-KO GEO Mus musculus GSE62482 5,677
AFF4 EL4 GFP_RA GEO Mus musculus GSE62482 10,582
AFF4 EL4 RA GEO Mus musculus GSE62482 8,365
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks