ARID1A

Information ARID1A

Description

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. Binds DNA non-specifically (PubMed:22952240, PubMed:26601204). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (PubMed:17640523). {ECO:0000250|UniProtKB:O14497, ECO:0000269|PubMed:17640523, ECO:0000303|PubMed:22952240, ECO:0000303|PubMed:26601204}.(Source UnitProtKB).

Full Name

AT rich interactive domain 1A (SWI-like)

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
5
Biotypes
2
Peaks
10,706
Non-redundant peaks
6,462

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
93760
Official Gene Name
Arid1a
JASPAR
MGI
MGI:1935147
Ensembl
ENSMUSG00000007880
UniProt
A2BH40
Genevisible
A2BH40
RefSeq
NM_001363070
Aliases
1110030E03Rik; BAF250a; Osa1; Smarcf1
All peaks ARID1A
Download BED file
Non redundant peaks ARID1A
Download BED file
SEQUENCES ARID1A
Download FASTA file
DOWNLOAD All ReMap
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Datasets Table for ARID1A

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
ARID1A liver-tumor homo GEO Mus musculus GSE102607 1,063
ARID1A liver-tumor GEO Mus musculus GSE102607 3,923
ARID1A iBAT ISO GEO Mus musculus GSE67586 823
ARID1A iBAT GEO Mus musculus GSE67586 168
ARID1A liver-tumor het GEO Mus musculus GSE102607 4,729
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks