ARID1A
Information ARID1A
- Description
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. Binds DNA non-specifically (PubMed:22952240, PubMed:26601204). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (PubMed:17640523). {ECO:0000250|UniProtKB:O14497, ECO:0000269|PubMed:17640523, ECO:0000303|PubMed:22952240, ECO:0000303|PubMed:26601204}.(Source UnitProtKB).
- Full Name
AT rich interactive domain 1A (SWI-like)
Source UniprotKB
- Species
Mus musculus [tax_id: 10090]
- Genome
mm10
ReMap Statistics
- Datasets
- 5
- Biotypes
- 2
- Peaks
- 10,706
- Non-redundant peaks
- 6,462
TF Classification
- Familly
- NA
- Sub Familly
- NA
Source JASPAR
External IDs
- NCBI Gene
- 93760
- Official Gene Name
- Arid1a
- JASPAR
- MGI
- MGI:1935147
- Ensembl
- ENSMUSG00000007880
- UniProt
- A2BH40
- Genevisible
- A2BH40
- RefSeq
- NM_001363070
- Aliases
- 1110030E03Rik; BAF250a; Osa1; Smarcf1
Datasets Table for ARID1A
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
ARID1A | liver-tumor | homo | GEO | Mus musculus | GSE102607 | 1,063 | ||
ARID1A | liver-tumor | GEO | Mus musculus | GSE102607 | 3,923 | |||
ARID1A | iBAT | ISO | GEO | Mus musculus | GSE67586 | 823 | ||
ARID1A | iBAT | GEO | Mus musculus | GSE67586 | 168 | |||
ARID1A | liver-tumor | het | GEO | Mus musculus | GSE102607 | 4,729 | ||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |