CDK9

Information CDK9

Description

Protein kinase involved in the regulation of transcription. Member of the cyclin-dependent kinase pair (CDK9/cyclin-T) complex, also called positive transcription elongation factor b (P-TEFb), which facilitates the transition from abortive to productive elongation by phosphorylating the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAP II) POLR2A, SUPT5H and RDBP. This complex is inactive when in the 7SK snRNP complex form. Phosphorylates EP300, MYOD1, RPB1/POLR2A and AR and the negative elongation factors DSIF and NELF. Regulates cytokine inducible transcription networks by facilitating promoter recognition of target transcription factors (e.g. TNF-inducible RELA/p65 activation and IL-6-inducible STAT3 signaling). Promotes RNA synthesis in genetic programs for cell growth, differentiation and viral pathogenesis. P-TEFb is also involved in cotranscriptional histone modification, mRNA processing and mRNA export. Modulates a complex network of chromatin modifications including histone H2B monoubiquitination (H2Bub1), H3 lysine 4 trimethylation (H3K4me3) and H3K36me3; integrates phosphorylation during transcription with chromatin modifications to control co-transcriptional histone mRNA processing. The CDK9/cyclin-K complex has also a kinase activity towards CTD of RNAP II and can substitute for CDK9/cyclin-T P-TEFb in vitro. Replication stress response protein; the CDK9/cyclin-K complex is required for genome integrity maintenance, by promoting cell cycle recovery from replication arrest and limiting single-stranded DNA amount in response to replication stress, thus reducing the breakdown of stalled replication forks and avoiding DNA damage. In addition, probable function in DNA repair of isoform 2 via interaction with KU70/XRCC6. Promotes cardiac myocyte enlargement. RPB1/POLR2A phosphorylation on 'Ser-2' in CTD activates transcription. AR phosphorylation modulates AR transcription factor promoter selectivity and cell growth. DSIF and NELF phosphorylation promotes transcription by inhibiting their negative effect. The phosphorylation of MYOD1 enhances its transcriptional activity and thus promotes muscle differentiation. {ECO:0000250|UniProtKB:P50750}.(Source UnitProtKB).

Full Name

cyclin-dependent kinase 9 (CDC2-related kinase)

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
9
Biotypes
3
Peaks
98,730
Non-redundant peaks
72,917

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
107951
Official Gene Name
Cdk9
JASPAR
MGI
MGI:1328368
Ensembl
ENSMUSG00000009555
UniProt
Q99J95
Genevisible
Q99J95
RefSeq
NM_130860
Aliases
PITALRE
All peaks CDK9
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Non redundant peaks CDK9
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SEQUENCES CDK9
Download FASTA file
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Datasets Table for CDK9

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
CDK9 mESC GEO Mus musculus GSE44286 36,591
CDK9 hemogenic-endothelium Dox-JQ1 GEO Mus musculus GSE104045 6,968
CDK9 hemogenic-endothelium Dox GEO Mus musculus GSE104045 17,028
CDK9 hemogenic-endothelium GEO Mus musculus GSE104045 5,163
CDK9 NIH3T3 JQ1 GEO Mus musculus GSE58731 800
CDK9 mESC GEO Mus musculus GSE30267 6,472
CDK9 NIH3T3 starved GEO Mus musculus GSE58731 10,765
CDK9 NIH3T3 GEO Mus musculus GSE58731 4,612
CDK9 NIH3T3 DMSO GEO Mus musculus GSE58731 10,331
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks