FIP1L1

Information FIP1L1

Description

This gene encodes a subunit of the CPSF (cleavage and polyadenylation specificity factor) complex that polyadenylates the 3' end of mRNA precursors. This gene, the homolog of yeast Fip1 (factor interacting with PAP), binds to U-rich sequences of pre-mRNA and stimulates poly(A) polymerase activity. Its N-terminus contains a PAP-binding site and its C-terminus an RNA-binding domain. An interstitial chromosomal deletion on 4q12 creates an in-frame fusion of human genes FIP1L1 and PDGFRA (platelet-derived growth factor receptor, alpha). The FIP1L1-PDGFRA fusion gene encodes a constitutively activated tyrosine kinase that joins the first 233 amino acids of FIP1L1 to the last 523 amino acids of PDGFRA. This gene fusion and chromosomal deletion is the cause of some forms of idiopathic hypereosinophilic syndrome (HES). This syndrome, recently reclassified as chronic eosinophilic leukemia (CEL), is responsive to treatment with tyrosine kinase inhibitors. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Oct 2008]

Full Name

factor interacting with PAPOLA and CPSF1

Source NCBI

Species

Homo sapiens [tax_id: 9606]

Genome

hg38

ReMap Statistics

Datasets
4
Biotypes
2
Peaks
78,590
Non-redundant peaks
48,419

TF Classification

Super Class
NA
Class
NA
Familly
NA
Sub Familly
NA

Source TFClass

External IDs

NCBI Gene
81608
Official Gene Name
FIP1L1
JASPAR
Ensembl
ENSG00000145216
UniProt
Q6UN15
Genevisible
Q6UN15
RefSeq
NM_001134937
Aliases
DKFZp586K0717
All peaks FIP1L1
Download BED file
Non redundant peaks FIP1L1
Download BED file
SEQUENCES FIP1L1
Download FASTA file
DOWNLOAD All ReMap
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Datasets Table for FIP1L1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
FIP1L1 Hep-G2 GEO Homo sapiens GSE120104 13,509
FIP1L1 K-562 GEO Homo sapiens GSE120104 14,214
FIP1L1 K-562 ENCODE Homo sapiens ENCSR177DNR 13,460
FIP1L1 Hep-G2 ENCODE Homo sapiens ENCSR313VZG 37,407
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks