FOXA1

Information FOXA1

Description

Transcription factor that is involved in embryonic development, establishment of tissue-specific gene expression and regulation of gene expression in differentiated tissues. Is thought to act as a 'pioneer' factor opening the compacted chromatin for other proteins through interactions with nucleosomal core histones and thereby replacing linker histones at target enhancer and/or promoter sites. Binds DNA with the consensus sequence 5'-[AC]A[AT]T[AG]TT[GT][AG][CT]T[CT]-3' (By similarity). Proposed to play a role in translating the epigenetic signatures into cell type-specific enhancer-driven transcriptional programs. Involved in the development of multiple endoderm-derived organ systems such as the liver, pancreas, lungs and prostate; FOXA1 and FOXA2 seem to have at least in part redundant roles. Plays a role in prostate morphogenesis and epithelial cell differentiation. FOXA1 and FOXA2 are essential for hepatic specification. FOXA1 and FOXA2 are required for morphogenesis and cell differentiation during formation of the lung. FOXA1 and FOXA2 are involved in bile duct formation; they positively regulate the binding of glucocorticoid receptor/NR3C1 to the IL6 promoter. FOXA1 and FOXA2 regulate multiple phases of midbrain dopaminergic neuron development; they regulate expression of NEUROG2 at the beginning of mDA neurogenesis and of NR4A2 and EN1 in immature mDA neurons. Modulates the transcriptional activity of nuclear hormone receptors. Is involved in ESR1-mediated transcription. Inhibits NKX2-1-mediated transcription from the SFTPC promoter in lung epithel independently from DNA-binding. Involved in regulation of apoptosis. Involved in cell cycle regulation. Originally described as a transcription activator for a number of liver genes such as AFP, albumin, tyrosine aminotransferase, PEPCK, etc. Interacts with the cis-acting regulatory regions of these genes. Involved in glucose homeostasis; activates the GCG promoter. {ECO:0000250, ECO:0000269|PubMed:10049364, ECO:0000269|PubMed:11864602, ECO:0000269|PubMed:15668254, ECO:0000269|PubMed:15748903, ECO:0000269|PubMed:15959514, ECO:0000269|PubMed:15987773, ECO:0000269|PubMed:17596284, ECO:0000269|PubMed:19141476, ECO:0000269|PubMed:19436110}.(Source UnitProtKB).

Full Name

forkhead box A1

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
21
Biotypes
8
Peaks
567,270
Non-redundant peaks
190,462

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
15375
Official Gene Name
Foxa1
JASPAR
MGI
MGI:1347472
Ensembl
ENSMUSG00000035451
UniProt
P35582
Genevisible
P35582
RefSeq
NM_008259
Aliases
Hnf-3a; Hnf3a; Tcf-3a; Tcf3a
All peaks FOXA1
Download BED file
Non redundant peaks FOXA1
Download BED file
SEQUENCES FOXA1
Download FASTA file
DOWNLOAD All ReMap
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Datasets Table for FOXA1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
FOXA1 primary-tumor-organoid T3 GEO Mus musculus GSE99284 49,451
FOXA1 primary-tumor-organoid T6 GEO Mus musculus GSE99284 33,545
FOXA1 primary-tumor-organoid T23 GEO Mus musculus GSE99284 65,868
FOXA1 primary-tumor-organoid KPC-2D-emp GEO Mus musculus GSE99284 23,886
FOXA1 liver GEO Mus musculus GSE33666 2,958
FOXA1 liver GEO Mus musculus GSE106379 50,393
FOXA1 liver GEO Mus musculus GSE17067 1,355
FOXA1 liver C3 GEO Mus musculus GSE106379 50,393
FOXA1 prostate Foxa1-R219S GEO Mus musculus GSE128867 1,532
FOXA1 prostate Foxa1-FE255del GEO Mus musculus GSE128867 1,521
FOXA1 prostate Foxa1-overexpression GEO Mus musculus GSE128867 10,705
FOXA1 peritoneum-metastasis M3P GEO Mus musculus GSE99284 54,909
FOXA1 liver-metastasis M1L GEO Mus musculus GSE99284 67,050
FOXA1 intestinal-villus-cell EED-ko-d11 GEO Mus musculus GSE111024 60,942
FOXA1 sperm GEO Mus musculus GSE116855 8,835
FOXA1 intestinal-villus-cell GEO Mus musculus GSE111024 8,451
FOXA1 peritoneum-metastasis M10P GEO Mus musculus GSE99284 33,170
FOXA1 embryonic-carcinoma RA-48h GEO Mus musculus GSE82314 6,550
FOXA1 liver-metastasis M1L-shRen GEO Mus musculus GSE99284 1,163
FOXA1 liver-metastasis M1L-shFoxa GEO Mus musculus GSE99284 3,618
FOXA1 primary-tumor-organoid FOXA1 GEO Mus musculus GSE99284 30,975
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks