GTF2B

Information GTF2B

Description

General transcription factor that plays a role in transcription initiation by RNA polymerase II (Pol II). Involved in the pre-initiation complex (PIC) formation and Pol II recruitment at promoter DNA. Together with the TATA box-bound TBP forms the core initiation complex and provides a bridge between TBP and the Pol II-TFIIF complex. Released from the PIC early following the onset of transcription during the initiation and elongation transition and reassociates with TBP during the next transcription cycle. Associates with chromatin to core promoter-specific regions. Binds to two distinct DNA core promoter consensus sequence elements in a TBP-independent manner; these IIB-recognition elements (BREs) are localized immediately upstream (BREu), 5'-[GC][GC][GA]CGCC-3', and downstream (BREd), 5'-[GA]T[TGA][TG][GT][TG][TG]-3', of the TATA box element. Modulates transcription start site selection. Exhibits also autoacetyltransferase activity that contributes to the activated transcription. {ECO:0000250|UniProtKB:Q00403}.(Source UnitProtKB).

Full Name

general transcription factor IIB

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
12
Biotypes
4
Peaks
171,316
Non-redundant peaks
77,197

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
229906
Official Gene Name
Gtf2b
JASPAR
MGI
MGI:2385191
Ensembl
ENSMUSG00000028271
UniProt
P62915
Genevisible
P62915
RefSeq
NM_145546
Aliases
All peaks GTF2B
Download BED file
Non redundant peaks GTF2B
Download BED file
SEQUENCES GTF2B
Download FASTA file
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Datasets Table for GTF2B

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
GTF2B liver TAF4-hep GEO Mus musculus GSE57807 7,924
GTF2B liver GEO Mus musculus GSE57807 16,910
GTF2B thymus GEO Mus musculus GSE29362 15,613
GTF2B mESC siEsrrb GEO Mus musculus GSE115340 11,717
GTF2B mESC GEO Mus musculus GSE70661 12,016
GTF2B mESC siCtrl GEO Mus musculus GSE115340 12,126
GTF2B mESC EB8-KO GEO Mus musculus GSE70661 7,504
GTF2B heart TAC GEO Mus musculus GSE56813 27,807
GTF2B heart postnatal GEO Mus musculus GSE56813 18,636
GTF2B heart normal GEO Mus musculus GSE56813 21,123
GTF2B mESC EB8-WT GEO Mus musculus GSE70661 12,802
GTF2B mESC ES-KO GEO Mus musculus GSE70661 7,138
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks