NFKB1

Information NFKB1

Description

NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. NF-kappa-B heterodimeric p65-p50 and RelB-p50 complexes are transcriptional activators. The NF-kappa-B p50-p50 homodimer is a transcriptional repressor, but can act as a transcriptional activator when associated with BCL3. NFKB1 appears to have dual functions such as cytoplasmic retention of attached NF-kappa-B proteins by p105 and generation of p50 by a cotranslational processing. The proteasome-mediated process ensures the production of both p50 and p105 and preserves their independent function, although processing of NFKB1/p105 also appears to occur post-translationally. p50 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the enhancer region of genes involved in immune response and acute phase reactions. Plays a role in the regulation of apoptosis. Isoform 5, isoform 6 and isoform 7 act as inhibitors of transactivation of p50 NF-kappa-B subunit, probably by sequestering it in the cytoplasm. Isoform 3 (p98) (but not p84 or p105) acts as a transactivator of NF-kappa-B-regulated gene expression. In a complex with MAP3K8, NFKB1/p105 represses MAP3K8-induced MAPK signaling; active MAP3K8 is released by proteasome-dependent degradation of NFKB1/p105.(Source UnitProtKB).

Full Name

nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
3
Biotypes
1
Peaks
897
Non-redundant peaks
778

TF Classification

Familly
Rel homology region (RHR) factors
Sub Familly
NF-kappaB-related factors

Source JASPAR

External IDs

NCBI Gene
18033
Official Gene Name
Nfkb1
JASPAR
MA0105.1
MGI
MGI:97312
Ensembl
ENSMUSG00000028163
UniProt
P25799
Genevisible
P25799
RefSeq
NM_008689
Aliases
NF kappaB1; NF-KB1; NF-kappaB; NF-kappaB p50; NF-kappaB1; nuclear factor kappaB p50; p105; p50; p50 subunit of NF kappaB; p50/p105
All peaks NFKB1
Download BED file
Non redundant peaks NFKB1
Download BED file
SEQUENCES NFKB1
Download FASTA file
DOWNLOAD All ReMap
Got to catalogue

Datasets Table for NFKB1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
NFKB1 BMDC GEO Mus musculus GSE36099 216
NFKB1 BMDC 1h GEO Mus musculus GSE36099 142
NFKB1 BMDC 30min GEO Mus musculus GSE36099 539
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks