NPAS4

Information NPAS4

Description

Transcription factor expressed in neurons of the brain that regulates the excitatory-inhibitory balance within neural circuits and is required for contextual memory in the hyppocampus (PubMed:18815592, PubMed:22194569, PubMed:23029555, PubMed:24201284, PubMed:24855953). Plays a key role in the structural and functional plasticity of neurons (PubMed:23172225). Acts as an early-response transcription factor in both excitatory and inhibitory neurons, where it induces distinct but overlapping sets of late-response genes in these two types of neurons, allowing the synapses that form on inhibitory and excitatory neurons to be modified by neuronal activity in a manner specific to their function within a circuit, thereby facilitating appropriate circuit responses to sensory experience (PubMed:24201284, PubMed:24855953). In excitatory neurons, activates transcription of BDNF, which in turn controls the number of GABA-releasing synapses that form on excitatory neurons, thereby promoting an increased number of inhibitory synapses on excitatory neurons (PubMed:18815592, PubMed:22194569, PubMed:24201284). In inhibitory neurons, regulates a distinct set of target genes that serve to increase excitatory input onto somatostatin neurons, probably resulting in enhanced feedback inhibition within cortical circuits (PubMed:24855953). The excitatory and inhibitory balance in neurons affects a number of processes, such as short-term and long-term memory, acquisition of experience, fear memory, response to stress and social behavior (PubMed:18815592, PubMed:22194569, PubMed:23029555, PubMed:24201284, PubMed:27238022). Acts as a regulator of dendritic spine development in olfactory bulb granule cells in a sensory-experience-dependent manner by regulating expression of MDM2 (PubMed:25088421). Efficient DNA binding requires dimerization with another bHLH protein, such as ARNT, ARNT2 or BMAL1 (PubMed:14701734, PubMed:15363889, PubMed:19284974). Can activate the CME (CNS midline enhancer) element (PubMed:14701734, PubMed:15363889). {ECO:0000269|PubMed:14701734, ECO:0000269|PubMed:15363889, ECO:0000269|PubMed:18815592, ECO:0000269|PubMed:22194569, ECO:0000269|PubMed:23029555, ECO:0000269|PubMed:23172225, ECO:0000269|PubMed:24201284, ECO:0000269|PubMed:24855953, ECO:0000269|PubMed:25088421, ECO:0000269|PubMed:27238022}.(Source UnitProtKB).

Full Name

neuronal PAS domain protein 4

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
6
Biotypes
1
Peaks
45,153
Non-redundant peaks
36,812

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
225872
Official Gene Name
Npas4
JASPAR
MGI
MGI:2664186
Ensembl
ENSMUSG00000045903
UniProt
Q8BGD7
Genevisible
Q8BGD7
RefSeq
NM_153553
Aliases
LE-PAS; Npas4; Nxf
All peaks NPAS4
Download BED file
Non redundant peaks NPAS4
Download BED file
SEQUENCES NPAS4
Download FASTA file
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Datasets Table for NPAS4

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
NPAS4 embryonic-cortical-culture 0kcl_n4shrna GEO Mus musculus GSE121660 110
NPAS4 embryonic-cortical-culture 2kcl_n4shrna GEO Mus musculus GSE121660 104
NPAS4 embryonic-cortical-culture 2kcl_ctlshrna GEO Mus musculus GSE121660 8,681
NPAS4 embryonic-cortical-culture 0kcl GEO Mus musculus GSE121660 182
NPAS4 embryonic-cortical-culture 2kcl GEO Mus musculus GSE121660 35,550
NPAS4 embryonic-cortical-culture 2kcl_a2shrna GEO Mus musculus GSE121660 526
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks