PHF5A

Information PHF5A

Description

Involved with the PAF1 complex (PAF1C) in transcriptional elongation by RNA polymerase II, and in regulation of development and maintenance of embryonic stem cell (ESC) pluripotency. Required for maintenance of ESCs self-renewal and cellular reprogramming of stem cells. Maintains pluripotency by recruiting and stabilizing PAF1C on pluripotency genes loci, and by regulating the expression of the pluripotency genes. Regulates the deposition of elongation-associated histone modifications, including dimethylated histone H3 'Lys-79' (H3K79me2) and trimethylated histone H3 'Lys-36' (H3K36me3), on PAF1C targets, self-renewal and pluripotency genes. Regulates RNA polymerase II promoter-proximal pause release of the PAF1C targets and self-renewal genes, and the levels of elongating ('Ser-2' phosphorylated) RNA polymerase II in their gene bodies. Regulates muscle specification in adult stem cells by stabilizing PAF1C in chromatin to promote myogenic differentiation (PubMed:27749823). Involved in pre-mRNA splicing as a component of the splicing factor SF3B complex. SF3B complex is required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA (By similarity). Acts as a transcriptional regulator by binding to the GJA1/Cx43 promoter and enhancing its up-regulation by ESR1/ER-alpha (By similarity). {ECO:0000250|UniProtKB:P83871, ECO:0000250|UniProtKB:Q7RTV0, ECO:0000269|PubMed:27749823}.(Source UnitProtKB).

Full Name

PHD finger protein 5A

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
5
Biotypes
1
Peaks
59,611
Non-redundant peaks
57,234

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
68479
Official Gene Name
Phf5a
JASPAR
MGI
MGI:2156864
Ensembl
ENSMUSG00000061360
UniProt
P83870
Genevisible
P83870
RefSeq
NM_026737
Aliases
1110007B08Rik
All peaks PHF5A
Download BED file
Non redundant peaks PHF5A
Download BED file
SEQUENCES PHF5A
Download FASTA file
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Datasets Table for PHF5A

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
PHF5A mESC WT GEO Mus musculus GSE80049 15,207
PHF5A mESC GEO Mus musculus GSE80049 241
PHF5A mESC GEO Mus musculus GSE73445 348
PHF5A mESC DKO GEO Mus musculus GSE80049 3,179
PHF5A mESC Dox GEO Mus musculus GSE73445 40,636
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks