PRDM9

Information PRDM9

Description

Histone methyltransferase that sequentially mono-, di-, and tri-methylates both 'Lys-4' (H3K4) and 'Lys-36' (H3K36) of histone H3 to produce respectively trimethylated 'Lys-4' (H3K4me3) and trimethylated 'Lys-36' (H3K36me3) histone H3 and plays a key role in meiotic prophase by determining hotspot localization thereby promoting meiotic recombination (PubMed:16292313, PubMed:24095733, PubMed:27362481, PubMed:24785241, PubMed:29478809). Also can methylate all four core histones with H3 being the best substrate and the most highly modified (PubMed:24785241, PubMed:27362481). Is also able, on one hand, to mono and di-methylate H4K20 and on other hand to trimethylate H3K9 with the di-methylated H3K9 as the best substrate (PubMed:24785241, PubMed:27362481). During meiotic prophase, binds specific DNA sequences through its zinc finger domains thereby determining hotspot localization where it promotes local H3K4me3 and H3K36me3 enrichment on the same nucleosomes through its histone methyltransferase activity (PubMed:22028627, PubMed:27362481, PubMed:29478809). Thereby promotes double-stranded breaks (DSB) formation, at this subset of PRDM9-binding sites, that initiates meiotic recombination for the proper meiotic progression (PubMed:16292313, PubMed:29478809). During meiotic progression hotspot-bound PRDM9 interacts with several complexes; in early leptonema binds CDYL and EHMT2 followed by EWSR1 and CXXC1 by the end of leptonema (PubMed:27932493). EWSR1 joins PRDM9 with the chromosomal axis through REC8 (PubMed:27932493). In this way, controls the DSB repair pathway, pairing of homologous chromosomes and sex body formation (PubMed:25894966, PubMed:16292313). Moreover plays a central role in the transcriptional activation of genes during early meiotic prophase thanks to H3K4me3 and H3K36me3 enrichment that represents a specific tag for epigenetic transcriptional activation (PubMed:16292313). In addition performs automethylation (PubMed:28126738). Acetylation and phosphorylation of histone H3 attenuate or prevent histone H3 methylation (PubMed:27362481). {ECO:0000269|PubMed:16292313, ECO:0000269|PubMed:22028627, ECO:0000269|PubMed:24095733, ECO:0000269|PubMed:24785241, ECO:0000269|PubMed:25894966, ECO:0000269|PubMed:27362481, ECO:0000269|PubMed:27932493, ECO:0000269|PubMed:28126738, ECO:0000269|PubMed:29478809, ECO:0000269|PubMed:32374261}.(Source UnitProtKB).

Full Name

PR domain containing 9

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
7
Biotypes
2
Peaks
38,201
Non-redundant peaks
30,148

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
213389
Official Gene Name
Prdm9
JASPAR
MGI
MGI:2384854
Ensembl
ENSMUSG00000051977
UniProt
Q96EQ9
Genevisible
Q96EQ9
RefSeq
NM_144809
Aliases
Dsbc1; G1-419-29; Meisetz; Rcr1; repro7
All peaks PRDM9
Download BED file
Non redundant peaks PRDM9
Download BED file
SEQUENCES PRDM9
Download FASTA file
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Datasets Table for PRDM9

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
PRDM9 spermatocyte GEO Mus musculus GSE61613 1,687
PRDM9 testis B6 GEO Mus musculus GSE93955 2,626
PRDM9 testis RJ2 GEO Mus musculus GSE93955 7,907
PRDM9 testis PRDM9-KO GEO Mus musculus GSE93955 778
PRDM9 testis SPO11-KO GEO Mus musculus GSE93955 817
PRDM9 testis GEO Mus musculus GSE60906 7,012
PRDM9 testis GEO Mus musculus GSE104850 17,374
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks