RARA

Information RARA

Description

Receptor for retinoic acid (PubMed:17205979). Retinoic acid receptors bind as heterodimers to their target response elements in response to their ligands, all-trans or 9-cis retinoic acid, and regulate gene expression in various biological processes (PubMed:17205979). The RXR/RAR heterodimers bind to the retinoic acid response elements (RARE) composed of tandem 5'-AGGTCA-3' sites known as DR1-DR5 (PubMed:17205979). In the absence of ligand, the RXR-RAR heterodimers associate with a multiprotein complex containing transcription corepressors that induce histone deacetylation, chromatin condensation and transcriptional suppression (By similarity). On ligand binding, the corepressors dissociate from the receptors and associate with the coactivators leading to transcriptional activation (PubMed:17205979, PubMed:9230306, PubMed:19078967). Formation of heterocomplex with histone deacetylases might lead to inhibition of RARE DNA element binding and to transcriptional repression (By similarity). Transcriptional activation and RARE DNA element binding might be supported by the transcription factor KLF2 (By similarity). RARA plays an essential role in the regulation of retinoic acid-induced germ cell development during spermatogenesis (PubMed:15901285). Has a role in the survival of early spermatocytes at the beginning prophase of meiosis (PubMed:15901285, PubMed:17905941). In Sertoli cells, may promote the survival and development of early meiotic prophase spermatocytes (PubMed:10660575, PubMed:17905941). In concert with RARG, required for skeletal growth, matrix homeostasis and growth plate function (PubMed:19389355). Together with RXRA, positively regulates microRNA-10a expression, thereby inhibiting the GATA6/VCAM1 signaling response to pulsatile shear stress in vascular endothelial cells (By similarity). In association with HDAC3, HDAC5 and HDAC7 corepressors, plays a role in the repression of microRNA-10a and thereby promotes the inflammatory response (By similarity). {ECO:0000250|UniProtKB:P10276, ECO:0000269|PubMed:10660575, ECO:0000269|PubMed:15901285, ECO:0000269|PubMed:17205979, ECO:0000269|PubMed:17905941, ECO:0000269|PubMed:19078967, ECO:0000269|PubMed:19389355, ECO:0000269|PubMed:9230306}.(Source UnitProtKB).

Full Name

retinoic acid receptor, alpha

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
6
Biotypes
3
Peaks
123,583
Non-redundant peaks
63,921

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
19401
Official Gene Name
Rara
JASPAR
MGI
MGI:97856
Ensembl
ENSMUSG00000037992
UniProt
P11416
Genevisible
P11416
RefSeq
NM_009024
Aliases
Nr1b1; RAR; RAR alpha 1; RARalpha1
All peaks RARA
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Non redundant peaks RARA
Download BED file
SEQUENCES RARA
Download FASTA file
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Datasets Table for RARA

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
RARA Th1 GEO Mus musculus GSE60353 740
RARA liver RA GEO Mus musculus GSE53736 48,440
RARA liver GEO Mus musculus GSE53736 34,062
RARA liver GEO Mus musculus GSE46762 34,060
RARA forelimb distal GEO Mus musculus GSE105206 2,015
RARA forelimb proximal GEO Mus musculus GSE105206 4,266
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks