RORC

Information RORC

Description

Nuclear receptor that binds DNA as a monomer to ROR response elements (RORE) containing a single core motif half-site 5'-AGGTCA-3' preceded by a short A-T-rich sequence. Key regulator of cellular differentiation, immunity, peripheral circadian rhythm as well as lipid, steroid, xenobiotics and glucose metabolism. Considered to have intrinsic transcriptional activity, have some natural ligands like oxysterols that act as agonists (25-hydroxycholesterol) or inverse agonists (7-oxygenated sterols), enhancing or repressing the transcriptional activity, respectively. Recruits distinct combinations of cofactors to target gene regulatory regions to modulate their transcriptional expression, depending on the tissue, time and promoter contexts (PubMed:17666523, PubMed:19381306, PubMed:19965867, PubMed:21853531, PubMed:22789990, PubMed:23723244). Regulates the circadian expression of clock genes such as CRY1, ARNTL/BMAL1 and NR1D1 in peripheral tissues and in a tissue-selective manner (PubMed:22753030). Competes with NR1D1 for binding to their shared DNA response element on some clock genes such as ARNTL/BMAL1, CRY1 and NR1D1 itself, resulting in NR1D1-mediated repression or RORC-mediated activation of the expression, leading to the circadian pattern of clock genes expression. Therefore influences the period length and stability of the clock (PubMed:22753030). Involved in the regulation of the rhythmic expression of genes involved in glucose and lipid metabolism, including PLIN2 and AVPR1A. Negative regulator of adipocyte differentiation through the regulation of early phase genes expression, such as MMP3. Controls adipogenesis as well as adipocyte size and modulates insulin sensitivity in obesity. In liver, has specific and redundant functions with RORA as positive or negative modulator of expression of genes encoding phase I and Phase II proteins involved in the metabolism of lipids, steroids and xenobiotics, such as SULT1E1 (PubMed:21853531). Also plays also a role in the regulation of hepatocyte glucose metabolism through the regulation of G6PC1 and PCK1. Regulates the rhythmic expression of PROX1 and promotes its nuclear localization. {ECO:0000269|PubMed:17666523, ECO:0000269|PubMed:19381306, ECO:0000269|PubMed:19965867, ECO:0000269|PubMed:21853531, ECO:0000269|PubMed:22753030, ECO:0000269|PubMed:22789990, ECO:0000269|PubMed:23723244}.; [Isoform 2]: Essential for thymopoiesis and the development of several secondary lymphoid tissues, including lymph nodes and Peyer's patches (PubMed:10602018, PubMed:14691482, PubMed:16148126). Required for the generation of LTi (lymphoid tissue inducer) cells. Regulates thymocyte survival through DNA-binding on ROREs of target gene promoter regions and recruitment of coactivaros via the AF-2. Also plays a key role, downstream of IL6 and TGFB and synergistically with RORA, for lineage specification of uncommitted CD4(+) T-helper (T(H)) cells into T(H)17 cells, antagonizing the T(H)1 program. Probably regulates IL17 and IL17F expression on T(H) by binding to the essential enhancer conserved non-coding sequence 2 (CNS2) in the IL17-IL17F locus (PubMed:16990136, PubMed:18164222, PubMed:26607793). May also play a role in the pre-TCR activation cascade leading to the maturation of alpha/beta T-cells and may participate in the regulation of DNA accessibility in the TCR-J(alpha) locus (PubMed:9881970, PubMed:10602018, PubMed:14691482, PubMed:16148126, PubMed:16990136, PubMed:18164222). Plays an indispensable role in the induction of IFN-gamma dependent anti-mycobacterial systemic immunity (By similarity). {ECO:0000250|UniProtKB:P51449, ECO:0000269|PubMed:10602018, ECO:0000269|PubMed:14691482, ECO:0000269|PubMed:16148126, ECO:0000269|PubMed:16990136, ECO:0000269|PubMed:18164222, ECO:0000269|PubMed:26607793, ECO:0000269|PubMed:9881970}.(Source UnitProtKB).

Full Name

RAR-related orphan receptor gamma

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
10
Biotypes
4
Peaks
166,299
Non-redundant peaks
99,083

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
19885
Official Gene Name
Rorc
JASPAR
MGI
MGI:104856
Ensembl
ENSMUSG00000028150
UniProt
P51450
Genevisible
P51450
RefSeq
NM_011281
Aliases
Nr1f3; RORgamma; TOR; Thor; thymus orphan receptor
All peaks RORC
Download BED file
Non redundant peaks RORC
Download BED file
SEQUENCES RORC
Download FASTA file
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Datasets Table for RORC

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
RORC liver LDKO GEO Mus musculus GSE101115 30,790
RORC liver ZT10 GEO Mus musculus GSE67962 18,416
RORC Th17 DMSO GEO Mus musculus GSE56019 1,227
RORC EL4 exogenous-Rorc GEO Mus musculus GSE56019 6,185
RORC EL4 GEO Mus musculus GSE56019 39,991
RORC Th0 GEO Mus musculus GSE40918 2,930
RORC Th17 GEO Mus musculus GSE56019 1,217
RORC Th17 GEO Mus musculus GSE40918 10,052
RORC liver GEO Mus musculus GSE101115 35,804
RORC liver ZT22 GEO Mus musculus GSE67962 19,687
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks