RXRA

Information RXRA

Description

Receptor for retinoic acid that acts as a transcription factor (PubMed:10383391, PubMed:12032153, PubMed:25417649). Forms homo- or heterodimers with retinoic acid receptors (RARs) and binds to target response elements in response to their ligands, all-trans or 9-cis retinoic acid, to regulate gene expression in various biological processes (PubMed:1310259, PubMed:10383391). The RAR/RXR heterodimers bind to the retinoic acid response elements (RARE) composed of tandem 5'-AGGTCA-3' sites known as DR1-DR5 to regulate transcription (PubMed:1310259). The high affinity ligand for retinoid X receptors (RXRs) is 9-cis retinoic acid (PubMed:10383391, PubMed:25417649). In the absence of ligand, the RXR-RAR heterodimers associate with a multiprotein complex containing transcription corepressors that induce histone deacetylation, chromatin condensation and transcriptional suppression (By similarity). On ligand binding, the corepressors dissociate from the receptors and coactivators are recruited leading to transcriptional activation (By similarity). Serves as a common heterodimeric partner for a number of nuclear receptors, such as RARA, RARB and PPARA (PubMed:1310259). The RXRA/RARB heterodimer can act as a transcriptional repressor or transcriptional activator, depending on the RARE DNA element context (By similarity). The RXRA/PPARA heterodimer is required for PPARA transcriptional activity on fatty acid oxidation genes such as ACOX1 and the P450 system genes (By similarity). Together with RARA, positively regulates microRNA-10a expression, thereby inhibiting the GATA6/VCAM1 signaling response to pulsatile shear stress in vascular endothelial cells (By similarity). Acts as an enhancer of RARA binding to RARE DNA element (By similarity). May facilitate the nuclear import of heterodimerization partners such as VDR and NR4A1 (By similarity). Promotes myelin debris phagocytosis and remyelination by macrophages (PubMed:26463675). Plays a role in the attenuation of the innate immune system in response to viral infections, possibly by negatively regulating the transcription of antiviral genes such as type I IFN genes (PubMed:25417649). Involved in the regulation of calcium signaling by repressing ITPR2 gene expression, thereby controlling cellular senescence (By similarity). {ECO:0000250|UniProtKB:P19793, ECO:0000269|PubMed:10383391, ECO:0000269|PubMed:12032153, ECO:0000269|PubMed:1310259, ECO:0000269|PubMed:25417649, ECO:0000269|PubMed:26463675}.(Source UnitProtKB).

Full Name

retinoid X receptor alpha

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
18
Biotypes
4
Peaks
631,226
Non-redundant peaks
162,995

TF Classification

Familly
Nuclear receptors with C4 zinc fingers
Sub Familly
RXR-related receptors (NR2)

Source JASPAR

External IDs

NCBI Gene
20181
Official Gene Name
Rxra
JASPAR
MA0512.2
MGI
MGI:98214
Ensembl
ENSMUSG00000015846
UniProt
P28700
Genevisible
P28700
RefSeq
NM_011305
Aliases
9530071D11Rik; Nr2b1; RXR; RXR alpha 1; RXRalpha1
All peaks RXRA
Download BED file
Non redundant peaks RXRA
Download BED file
SEQUENCES RXRA
Download FASTA file
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Datasets Table for RXRA

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
RXRA liver female GEO Mus musculus GSE21696 56,680
RXRA liver male GEO Mus musculus GSE21696 57,182
RXRA liver RA GEO Mus musculus GSE53736 69,241
RXRA liver TCPOBOP-3h GEO Mus musculus GSE121915 38,837
RXRA liver GEO Mus musculus GSE46762 69,822
RXRA P19 ATRA-24h GEO Mus musculus GSE68540 160
RXRA P19 ATRA-48h GEO Mus musculus GSE68540 1,660
RXRA F9 ATRA-6h GEO Mus musculus GSE68540 606
RXRA embryonic-carcinoma GEO Mus musculus GSE32332 2,201
RXRA embryonic-carcinoma LinDA GEO Mus musculus GSE32332 11,460
RXRA liver vehicle-3h GEO Mus musculus GSE121915 27,031
RXRA liver HFD GEO Mus musculus GSE47954 11,537
RXRA liver female_KO GEO Mus musculus GSE21696 79,685
RXRA liver vehicle-27h GEO Mus musculus GSE121915 65,096
RXRA liver GEO Mus musculus GSE53736 69,832
RXRA liver TCPOBOP-27h GEO Mus musculus GSE121915 61,250
RXRA liver CR GEO Mus musculus GSE47954 8,796
RXRA P19 ATRA-2h GEO Mus musculus GSE68540 150
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks