SAFB

Information SAFB

Description

This gene encodes a DNA-binding protein which has high specificity for scaffold or matrix attachment region DNA elements (S/MAR DNA). This protein is thought to be involved in attaching the base of chromatin loops to the nuclear matrix but there is conflicting evidence as to whether this protein is a component of chromatin or a nuclear matrix protein. Scaffold attachment factors are a specific subset of nuclear matrix proteins (NMP) that specifically bind to S/MAR. The encoded protein is thought to serve as a molecular base to assemble a 'transcriptosome complex' in the vicinity of actively transcribed genes. It is involved in the regulation of heat shock protein 27 transcription, can act as an estrogen receptor co-repressor and is a candidate for breast tumorigenesis. This gene is arranged head-to-head with a similar gene whose product has the same functions. Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Jan 2011]

Full Name

scaffold attachment factor B

Source NCBI

Species

Homo sapiens [tax_id: 9606]

Genome

hg38

ReMap Statistics

Datasets
2
Biotypes
1
Peaks
13,755
Non-redundant peaks
7,896

TF Classification

Super Class
NA
Class
NA
Familly
NA
Sub Familly
NA

Source TFClass

External IDs

NCBI Gene
6294
Official Gene Name
SAFB
JASPAR
Ensembl
ENSG00000160633
UniProt
Q15424
Genevisible
Q15424
RefSeq
NM_001201338
Aliases
HAP; HET; SAB-B1; SAF-B; SAF-B1; SAFB1
All peaks SAFB
Download BED file
Non redundant peaks SAFB
Download BED file
SEQUENCES SAFB
Download FASTA file
DOWNLOAD All ReMap
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Datasets Table for SAFB

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
SAFB K-562 GEO Homo sapiens GSE120104 7,422
SAFB K-562 ENCODE Homo sapiens ENCSR072VUO 6,333
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks