SMARCA4

Information SMARCA4

Description

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating the calcium-dependent release of a repressor complex and the recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by SMARCA4-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves the release of HDAC1 and recruitment of CREBBP (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development, a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role in regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1 (By similarity). Binds via DLX1 to enhancers located in the intergenic region between DLX5 and DLX6 and this binding is stabilized by the long non-coding RNA (lncRNA) Evf2 (PubMed:26138476). Binds to RNA in a promiscuous manner (PubMed:26138476). Binding to RNAs including lncRNA Evf2 leads to inhibition of SMARCA4 ATPase and chromatin remodeling activities (PubMed:26138476). {ECO:0000250|UniProtKB:P51532, ECO:0000269|PubMed:17640523, ECO:0000269|PubMed:26138476}.(Source UnitProtKB).

Full Name

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
55
Biotypes
22
Peaks
1,301,010
Non-redundant peaks
467,966

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
20586
Official Gene Name
Smarca4
JASPAR
MGI
MGI:88192
Ensembl
ENSMUSG00000032187
UniProt
Q3TKT4
Genevisible
Q3TKT4
RefSeq
NM_011417
Aliases
BAF190A; Brg1; HP1-BP72; SNF2beta; SW1/SNF; b2b508.1Clo; b2b692Clo
All peaks SMARCA4
Download BED file
Non redundant peaks SMARCA4
Download BED file
SEQUENCES SMARCA4
Download FASTA file
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Datasets Table for SMARCA4

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
SMARCA4 CD4-pos naive GEO Mus musculus GSE23719 2,751
SMARCA4 3134 GEO Mus musculus GSE94562 77,442
SMARCA4 primary-fibroblast ANM GEO Mus musculus GSE83295 13,803
SMARCA4 primary-fibroblast 90min_ANM GEO Mus musculus GSE83295 30,461
SMARCA4 pre-iPSC GEO Mus musculus GSE90893 56,254
SMARCA4 neural-tube GEO Mus musculus GSE37151 43,600
SMARCA4 MEF GEO Mus musculus GSE100096 2,324
SMARCA4 ZHBTc4 GEO Mus musculus GSE87820 1,962
SMARCA4 AML GEO Mus musculus GSE52277 149
SMARCA4 adenocarcinoma tetra_DEX GEO Mus musculus GSE108634 48,969
SMARCA4 B-cell resting GEO Mus musculus GSE82144 47,975
SMARCA4 B-cell activated GEO Mus musculus GSE82144 62,240
SMARCA4 mammary-epithelium GEO Mus musculus GSE53583 44,618
SMARCA4 skin GEO Mus musculus GSE50921 650
SMARCA4 testis P12 GEO Mus musculus GSE119177 57,275
SMARCA4 testis P18 GEO Mus musculus GSE119177 22,881
SMARCA4 mESC Brg1fl_Tam-72h GEO Mus musculus GSE87820 7,937
SMARCA4 mESC Sox2 GEO Mus musculus GSE134669 729
SMARCA4 mESC WT GEO Mus musculus GSE80049 28,849
SMARCA4 mESC dCD GEO Mus musculus GSE80049 27,863
SMARCA4 mESC GEO Mus musculus GSE45447 9,595
SMARCA4 mESC GEO Mus musculus GSE134669 927
SMARCA4 mESC GEO Mus musculus GSE90893 51,113
SMARCA4 mESC UNT GEO Mus musculus GSE87820 34,494
SMARCA4 mESC Ola GEO Mus musculus GSE80049 1,676
SMARCA4 mESC WT_Ola GEO Mus musculus GSE80049 364
SMARCA4 mESC Dox-min GEO Mus musculus GSE118898 973
SMARCA4 iBAT GEO Mus musculus GSE67586 2,473
SMARCA4 limb GEO Mus musculus GSE37151 18,650
SMARCA4 BMDM 0min GEO Mus musculus GSE99895 60,762
SMARCA4 BMDM 2h GEO Mus musculus GSE99895 73,073
SMARCA4 BMDM 15min GEO Mus musculus GSE99895 68,144
SMARCA4 face GEO Mus musculus GSE37151 50,659
SMARCA4 iBAT ISO GEO Mus musculus GSE67586 10,479
SMARCA4 adenocarcinoma GEO Mus musculus GSE108634 475
SMARCA4 adenocarcinoma tetra GEO Mus musculus GSE108634 3,943
SMARCA4 adenocarcinoma DEX GEO Mus musculus GSE108634 3,152
SMARCA4 heart Tb4 GEO Mus musculus GSE76239 320
SMARCA4 heart PBS GEO Mus musculus GSE76239 6,095
SMARCA4 CD4-pos stimulated-Th1 GEO Mus musculus GSE23719 13,026
SMARCA4 CD4-pos stimulated-Th2 GEO Mus musculus GSE23719 10,807
SMARCA4 CD4-pos stimulated-Th17 GEO Mus musculus GSE23719 4,823
SMARCA4 CD4-pos resting-Th2 GEO Mus musculus GSE23719 8,557
SMARCA4 CD4-pos resting-Th1 GEO Mus musculus GSE23719 9,954
SMARCA4 bone-marrow pro-B-cell GEO Mus musculus GSE66978 8,814
SMARCA4 BMDM 30min GEO Mus musculus GSE99895 69,635
SMARCA4 MEF Smarcb1 GEO Mus musculus GSE71507 734
SMARCA4 MEF GEO Mus musculus GSE71507 72,427
SMARCA4 retina GEO Mus musculus GSE74268 47,449
SMARCA4 mESC DKO_B6 GEO Mus musculus GSE80049 525
SMARCA4 mESC 72hTAM GEO Mus musculus GSE87820 7,937
SMARCA4 mESC Brg1fl GEO Mus musculus GSE87820 11,476
SMARCA4 mESC Dox-plus GEO Mus musculus GSE118898 3,015
SMARCA4 ZHBTc4 Dox-24h GEO Mus musculus GSE87820 6,345
SMARCA4 forebrain GEO Mus musculus GSE37151 49,387
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks