SMARCA5

Information SMARCA5

Description

Helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity. Complexes containing SMARCA5 are capable of forming ordered nucleosome arrays on chromatin; this may require intact histone H4 tails. Also required for replication of pericentric heterochromatin in S-phase specifically in conjunction with BAZ1A. Probably plays a role in repression of polI dependent transcription of the rDNA locus, through the recruitment of the SIN3/HDAC1 corepressor complex to the rDNA promoter. Essential component of the WICH complex, a chromatin remodeling complex that mobilizes nucleosomes and reconfigures irregular chromatin to a regular nucleosomal array structure. The WICH complex regulates the transcription of various genes, has a role in RNA polymerase I and RNA polymerase III transcription, mediates the histone H2AX phosphorylation at 'Tyr-142', and is involved in the maintenance of chromatin structures during DNA replication processes. Essential component of the NoRC (nucleolar remodeling complex) complex, a complex that mediates silencing of a fraction of rDNA by recruiting histone-modifying enzymes and DNA methyltransferases, leading to heterochromatin formation and transcriptional silencing. {ECO:0000269|PubMed:11532953, ECO:0000269|PubMed:11980720, ECO:0000269|PubMed:12198165, ECO:0000269|PubMed:12368916, ECO:0000269|PubMed:14617767, ECO:0000269|PubMed:19092802}.(Source UnitProtKB).

Full Name

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
3
Biotypes
3
Peaks
44,384
Non-redundant peaks
44,360

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
93762
Official Gene Name
Smarca5
JASPAR
MGI
MGI:1935129
Ensembl
ENSMUSG00000031715
UniProt
Q91ZW3
Genevisible
Q91ZW3
RefSeq
Aliases
4933427E24Rik; D030040M08Rik; D330027N15Rik; MommeD4; Snf2h
All peaks SMARCA5
Download BED file
Non redundant peaks SMARCA5
Download BED file
SEQUENCES SMARCA5
Download FASTA file
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Datasets Table for SMARCA5

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
SMARCA5 NAc Susceptible GEO Mus musculus GSE54263 156
SMARCA5 mESC GEO Mus musculus GSE80049 276
SMARCA5 mammary-epithelium GEO Mus musculus GSE53583 43,952
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks