SMC1A

Information SMC1A

Description

Involved in chromosome cohesion during cell cycle and in DNA repair. Involved in DNA repair via its interaction with BRCA1 and its related phosphorylation by ATM, and works as a downstream effector in the ATM/NBS1 branch of S-phase checkpoint (By similarity). Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Involved in DNA repair via its interaction with BRCA1 and its related phosphorylation by ATM, or via its phosphorylation by ATR. Works as a downstream effector both in the ATM/NBS1 branch and in the ATR/MSH2 branch of S-phase checkpoint. {ECO:0000250}.(Source UnitProtKB).

Full Name

structural maintenance of chromosomes 1A

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
48
Biotypes
21
Peaks
1,678,563
Non-redundant peaks
397,934

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
24061
Official Gene Name
Smc1a
JASPAR
MGI
MGI:1344345
Ensembl
ENSMUSG00000041133
UniProt
Q9CU62
Genevisible
Q9CU62
RefSeq
Aliases
5830426I24Rik; SB1.8; SMC-1A; SMCB; Sb1.8; Smc1; Smc1alpha; Smc1l1; Smcb; mKIAA0178
All peaks SMC1A
Download BED file
Non redundant peaks SMC1A
Download BED file
SEQUENCES SMC1A
Download FASTA file
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Datasets Table for SMC1A

Target nameTarget modificationEcotype/StrainBiotypeBiotype modificationSourceSpeciesExperimentPeaks
SMC1A fibroblast Xist-del GEO Mus musculus GSE67516 33,367
SMC1A fibroblast GEO Mus musculus GSE67516 35,847
SMC1A HPC-7 Ery_Luc GEO Mus musculus GSE129478 19,768
SMC1A HPC-7 Ery_shStag2 GEO Mus musculus GSE129478 48,496
SMC1A HPC-7 shRad21 GEO Mus musculus GSE129478 24,147
SMC1A MEF GEO Mus musculus GSE32319 25,449
SMC1A MEF GEO Mus musculus GSE22562 55,749
SMC1A MEF Stag1-KO GEO Mus musculus GSE32319 50,242
SMC1A cortex GEO Mus musculus GSE42237 1,063
SMC1A embryonic-brain GEO Mus musculus GSE117184 13,085
Target nameTarget modificationEcotype/StrainBiotypeBiotype modificationSourceSpeciesExperimentPeaks
Showing 1 to 10 of 48 entries