SOX9
Information SOX9
- Description
Transcription factor that plays a key role in chondrocytes differentiation and skeletal development (PubMed:10319868, PubMed:11371614, PubMed:12414734, PubMed:15132997, PubMed:18415932, PubMed:20940257, PubMed:28263186). Specifically binds the 5'-ACAAAG-3' DNA motif present in enhancers and super-enhancers and promotes expression of genes important for chondrogenesis, including cartilage matrix protein-coding genes COL2A1, COL4A2, COL9A1, COL11A2 and ACAN, SOX5 and SOX6 (PubMed:9119111, PubMed:10805756, PubMed:12414734, PubMed:15694126, PubMed:17525254, PubMed:26146088, PubMed:26150426, PubMed:26910618, PubMed:28263186). Also binds to some promoter regions (PubMed:20940257). Plays a central role in successive steps of chondrocyte differentiation (PubMed:11371614, PubMed:12414734, PubMed:22421045). Absolutely required for precartilaginous condensation, the first step in chondrogenesis during which skeletal progenitors differentiate into prechondrocytes (PubMed:11371614, PubMed:12414734). Together with SOX5 and SOX6, required for overt chondrogenesis when condensed prechondrocytes differentiate into early stage chondrocytes, the second step in chondrogenesis (PubMed:11371614, PubMed:12414734, PubMed:15529345). Later, required to direct hypertrophic maturation and block osteoblast differentiation of growth plate chondrocytes: maintains chondrocyte columnar proliferation, delays prehypertrophy and then prevents osteoblastic differentiation of chondrocytes by lowering beta-catenin (CTNNB1) signaling and RUNX2 expression (PubMed:22421045, PubMed:31121357). Also required for chondrocyte hypertrophy, both indirectly, by keeping the lineage fate of chondrocytes, and directly, by remaining present in upper hypertrophic cells and transactivating COL10A1 along with MEF2C (PubMed:21367821, PubMed:22421045). Low lipid levels are the main nutritional determinant for chondrogenic commitment of skeletal progenitor cells: when lipids levels are low, FOXO (FOXO1 and FOXO3) transcription factors promote expression of SOX9, which induces chondrogenic commitment and suppresses fatty acid oxidation (PubMed:32103177). Mechanistically, helps, but is not required, to remove epigenetic signatures of transcriptional repression and deposit active promoter and enhancer marks at chondrocyte-specific genes (PubMed:30021842). Acts in cooperation with the Hedgehog pathway-dependent GLI (GLI1 and GLI3) transcription factors (PubMed:29659575). In addition to cartilage development, also acts as a regulator of proliferation and differentiation in epithelial stem/progenitor cells: involved in the lung epithelium during branching morphogenesis, by balancing proliferation and differentiation and regulating the extracellular matrix (PubMed:24191021). Controls epithelial branching during kidney development (PubMed:21212101). {ECO:0000269|PubMed:10319868, ECO:0000269|PubMed:10805756, ECO:0000269|PubMed:11371614, ECO:0000269|PubMed:12414734, ECO:0000269|PubMed:15132997, ECO:0000269|PubMed:15529345, ECO:0000269|PubMed:15694126, ECO:0000269|PubMed:17525254, ECO:0000269|PubMed:18415932, ECO:0000269|PubMed:20940257, ECO:0000269|PubMed:21212101, ECO:0000269|PubMed:21367821, ECO:0000269|PubMed:22421045, ECO:0000269|PubMed:24191021, ECO:0000269|PubMed:26146088, ECO:0000269|PubMed:26150426, ECO:0000269|PubMed:26910618, ECO:0000269|PubMed:28263186, ECO:0000269|PubMed:29659575, ECO:0000269|PubMed:30021842, ECO:0000269|PubMed:31121357, ECO:0000269|PubMed:32103177, ECO:0000269|PubMed:9119111}.(Source UnitProtKB).
- Full Name
SRY (sex determining region Y)-box 9
Source UniprotKB
- Species
Mus musculus [tax_id: 10090]
- Genome
mm10
ReMap Statistics
- Datasets
- 11
- Biotypes
- 9
- Peaks
- 173,318
- Non-redundant peaks
- 113,246
TF Classification
- Familly
- NA
- Sub Familly
- NA
Source JASPAR
Datasets Table for SOX9
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
SOX9 | chondrocyte | rib | GEO | Mus musculus | GSE69109 | 62,791 | ||
SOX9 | testis | GEO | Mus musculus | GSE81488 | 24,617 | |||
SOX9 | 3T3-L1 | subconfluent | GEO | Mus musculus | GSE118571 | 1,552 | ||
SOX9 | limb | GEO | Mus musculus | GSE73225 | 10,613 | |||
SOX9 | glial-progenitor-cell | GEO | Mus musculus | GSE117997 | 5,300 | |||
SOX9 | chondrocyte | nasal | GEO | Mus musculus | GSE69109 | 36,424 | ||
SOX9 | basal-cell-carcinoma | GEO | Mus musculus | GSE68755 | 4,026 | |||
SOX9 | back-skin | IFE | GEO | Mus musculus | GSE54424 | 10,145 | ||
SOX9 | back-skin | GEO | Mus musculus | GSE54424 | 14,909 | |||
SOX9 | heart | GEO | Mus musculus | GSE73225 | 788 | |||
SOX9 | vertebral-column | E12-5 | GEO | Mus musculus | GSE36672 | 2,153 | ||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |