SOX9

Information SOX9

Description

Transcription factor that plays a key role in chondrocytes differentiation and skeletal development (PubMed:10319868, PubMed:11371614, PubMed:12414734, PubMed:15132997, PubMed:18415932, PubMed:20940257, PubMed:28263186). Specifically binds the 5'-ACAAAG-3' DNA motif present in enhancers and super-enhancers and promotes expression of genes important for chondrogenesis, including cartilage matrix protein-coding genes COL2A1, COL4A2, COL9A1, COL11A2 and ACAN, SOX5 and SOX6 (PubMed:9119111, PubMed:10805756, PubMed:12414734, PubMed:15694126, PubMed:17525254, PubMed:26146088, PubMed:26150426, PubMed:26910618, PubMed:28263186). Also binds to some promoter regions (PubMed:20940257). Plays a central role in successive steps of chondrocyte differentiation (PubMed:11371614, PubMed:12414734, PubMed:22421045). Absolutely required for precartilaginous condensation, the first step in chondrogenesis during which skeletal progenitors differentiate into prechondrocytes (PubMed:11371614, PubMed:12414734). Together with SOX5 and SOX6, required for overt chondrogenesis when condensed prechondrocytes differentiate into early stage chondrocytes, the second step in chondrogenesis (PubMed:11371614, PubMed:12414734, PubMed:15529345). Later, required to direct hypertrophic maturation and block osteoblast differentiation of growth plate chondrocytes: maintains chondrocyte columnar proliferation, delays prehypertrophy and then prevents osteoblastic differentiation of chondrocytes by lowering beta-catenin (CTNNB1) signaling and RUNX2 expression (PubMed:22421045, PubMed:31121357). Also required for chondrocyte hypertrophy, both indirectly, by keeping the lineage fate of chondrocytes, and directly, by remaining present in upper hypertrophic cells and transactivating COL10A1 along with MEF2C (PubMed:21367821, PubMed:22421045). Low lipid levels are the main nutritional determinant for chondrogenic commitment of skeletal progenitor cells: when lipids levels are low, FOXO (FOXO1 and FOXO3) transcription factors promote expression of SOX9, which induces chondrogenic commitment and suppresses fatty acid oxidation (PubMed:32103177). Mechanistically, helps, but is not required, to remove epigenetic signatures of transcriptional repression and deposit active promoter and enhancer marks at chondrocyte-specific genes (PubMed:30021842). Acts in cooperation with the Hedgehog pathway-dependent GLI (GLI1 and GLI3) transcription factors (PubMed:29659575). In addition to cartilage development, also acts as a regulator of proliferation and differentiation in epithelial stem/progenitor cells: involved in the lung epithelium during branching morphogenesis, by balancing proliferation and differentiation and regulating the extracellular matrix (PubMed:24191021). Controls epithelial branching during kidney development (PubMed:21212101). {ECO:0000269|PubMed:10319868, ECO:0000269|PubMed:10805756, ECO:0000269|PubMed:11371614, ECO:0000269|PubMed:12414734, ECO:0000269|PubMed:15132997, ECO:0000269|PubMed:15529345, ECO:0000269|PubMed:15694126, ECO:0000269|PubMed:17525254, ECO:0000269|PubMed:18415932, ECO:0000269|PubMed:20940257, ECO:0000269|PubMed:21212101, ECO:0000269|PubMed:21367821, ECO:0000269|PubMed:22421045, ECO:0000269|PubMed:24191021, ECO:0000269|PubMed:26146088, ECO:0000269|PubMed:26150426, ECO:0000269|PubMed:26910618, ECO:0000269|PubMed:28263186, ECO:0000269|PubMed:29659575, ECO:0000269|PubMed:30021842, ECO:0000269|PubMed:31121357, ECO:0000269|PubMed:32103177, ECO:0000269|PubMed:9119111}.(Source UnitProtKB).

Full Name

SRY (sex determining region Y)-box 9

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
11
Biotypes
9
Peaks
173,318
Non-redundant peaks
113,246

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
20682
Official Gene Name
Sox9
JASPAR
MGI
MGI:98371
Ensembl
ENSMUSG00000000567
UniProt
Q04887
Genevisible
Q04887
RefSeq
NM_011448
Aliases
2010306G03Rik; AV220920; mKIAA4243
All peaks SOX9
Download BED file
Non redundant peaks SOX9
Download BED file
SEQUENCES SOX9
Download FASTA file
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Datasets Table for SOX9

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
SOX9 chondrocyte rib GEO Mus musculus GSE69109 62,791
SOX9 testis GEO Mus musculus GSE81488 24,617
SOX9 3T3-L1 subconfluent GEO Mus musculus GSE118571 1,552
SOX9 limb GEO Mus musculus GSE73225 10,613
SOX9 glial-progenitor-cell GEO Mus musculus GSE117997 5,300
SOX9 chondrocyte nasal GEO Mus musculus GSE69109 36,424
SOX9 basal-cell-carcinoma GEO Mus musculus GSE68755 4,026
SOX9 back-skin IFE GEO Mus musculus GSE54424 10,145
SOX9 back-skin GEO Mus musculus GSE54424 14,909
SOX9 heart GEO Mus musculus GSE73225 788
SOX9 vertebral-column E12-5 GEO Mus musculus GSE36672 2,153
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks