SYD

Information SYD

Description

Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.

Full Name

P-loop containing nucleoside triphosphate hydrolases superfamily protein

Source NCBI

Species

Arabidopsis thaliana [tax_id: 3702]

Genome

TAIR10

ReMap Statistics

Datasets
5
Biotypes
2
Peaks
82,619
Non-redundant peaks
47,892

TF Classification

Familly
NA
Sub Familly
NA

Source AtTFDB

External IDs

NCBI Gene
817375
Official Gene Name
SYD
JASPAR
Ensembl
AT2G28290
UniProt
F4IHS2
Genevisible
F4IHS2
RefSeq
NM_179786.2
Aliases
All peaks SYD
Download BED file
Non redundant peaks SYD
Download BED file
SEQUENCES SYD
Download FASTA file
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Datasets Table for SYD

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
SYD Col Col_inflorescence syd GEO Arabidopsis thaliana GSE104665 13,855
SYD Col Col_inflorescence GEO Arabidopsis thaliana GSE104665 24,891
SYD Col Col_inflorescence swn GEO Arabidopsis thaliana GSE104665 3,921
SYD Col Col_inflorescence clf GEO Arabidopsis thaliana GSE104665 27,144
SYD Col-0 Col-0_seedling GEO Arabidopsis thaliana GSE126889 12,808
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks