Scm

Information Scm

Description

The gene Sex comb on midleg is referred to in FlyBase by the symbol DmelScm (CG9495, FBgn0003334). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3R:9633359..9637611. Its molecular function is described by 6 unique terms, many of which group under: binding; protein binding; identical protein binding; transition metal ion binding; PRC1 complex binding. It is involved in the biological process described with 9 unique terms, many of which group under: germ-line cyst encapsulation; cell part morphogenesis; neurogenesis; growth; primary metabolic process. 63 alleles are reported. The phenotypes of these alleles manifest in: neuromere; embryonic/larval nervous system; larval abdominal segment 7; plasma membrane bounded cell projection; adult external head. The phenotypic classes of alleles include: lethal - all die before end of first instar larval stage; phenotype; increased mortality during development; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.

Full Name

Sex comb on midleg

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
2
Biotypes
2
Peaks
27,263
Non-redundant peaks
26,180

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
41168
Official Gene Name
Scm
JASPAR
Ensembl
FBgn0003334
UniProt
Q9VHA0
Genevisible
Q9VHA0
RefSeq
NM_169299
Aliases
Scm
All peaks Scm
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Non redundant peaks Scm
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SEQUENCES Scm
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Datasets Table for Scm

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
Scm Schneider-2 GEO Drosophila melanogaster GSE66183 23,878
Scm embryo 12h-24h GEO Drosophila melanogaster GSE66183 3,385
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks