Ssrp

Information Ssrp

Description

The gene Structure specific recognition protein is referred to in FlyBase by the symbol DmelSsrp (CG4817, FBgn0010278). It is a protein_coding_gene from Dmel. It has one annotated transcript and one polypeptide. Gene sequence location is 2R:23806361..23809004. Its molecular function is described by: histone binding; nucleosome binding; protein self-association; protein binding; nucleosomal DNA binding. It is involved in the biological process described with 6 unique terms, many of which group under: chromatin organization; regulation of chromatin organization; cellular metabolic process; developmental process involved in reproduction; actin filament polymerization. 13 alleles are reported. The phenotypes of these alleles manifest in: somatic precursor cell; cell; mesothoracic segment; adult thoracic segment; eye. The phenotypic classes of alleles include: increased mortality; increased mortality during development; lethal - all die before end of P-stage; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages.

Full Name

Structure specific recognition protein

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
4
Biotypes
2
Peaks
50,912
Non-redundant peaks
38,026

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
37767
Official Gene Name
Ssrp
JASPAR
Ensembl
FBgn0010278
UniProt
Q05344
Genevisible
Q05344
RefSeq
NM_079106
Aliases
Ssrp
All peaks Ssrp
Download BED file
Non redundant peaks Ssrp
Download BED file
SEQUENCES Ssrp
Download FASTA file
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Datasets Table for Ssrp

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
Ssrp Schneider-2 eGFPdsRNA_homemade GEO Drosophila melanogaster GSE113470 10,983
Ssrp Schneider-2 SSRP1dsRNA_b_homemade GEO Drosophila melanogaster GSE113470 9,534
Ssrp Schneider-2 SSRP1dsRNA_a_homemade GEO Drosophila melanogaster GSE113470 12,645
Ssrp adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR633IKC 17,750
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks