TET1

Information TET1

Description

Dioxygenase that catalyzes the conversion of the modified genomic base 5-methylcytosine (5mC) into 5-hydroxymethylcytosine (5hmC) and plays a key role in active DNA demethylation. Also mediates subsequent conversion of 5hmC into 5-formylcytosine (5fC), and conversion of 5fC to 5-carboxylcytosine (5caC). Conversion of 5mC into 5hmC, 5fC and 5caC probably constitutes the first step in cytosine demethylation. Methylation at the C5 position of cytosine bases is an epigenetic modification of the mammalian genome which plays an important role in transcriptional regulation. In addition to its role in DNA demethylation, plays a more general role in chromatin regulation. Preferentially binds to CpG-rich sequences at promoters of both transcriptionally active and Polycomb-repressed genes. Involved in the recruitment of the O-GlcNAc transferase OGT to CpG-rich transcription start sites of active genes, thereby promoting histone H2B GlcNAcylation by OGT. Also involved in transcription repression of a subset of genes through recruitment of transcriptional repressors to promoters. Involved in the balance between pluripotency and lineage commitment of cells it plays a role in embryonic stem cells maintenance and inner cell mass cell specification. Plays an essential role in the tumorigenicity of glioblastoma cells. TET1-mediated production of 5hmC acts as a recruitment signal for the CHTOP-methylosome complex to selective sites on the chromosome, where it methylates H4R3 and activates the transcription of genes involved in glioblastomagenesis (PubMed:25284789). Binds preferentially to DNA containing cytidine-phosphate-guanosine (CpG) dinucleotides over CpH (H=A, T, and C), hemimethylated-CpG and hemimethylated-hydroxymethyl-CpG (By similarity). {ECO:0000250|UniProtKB:Q8NFU7, ECO:0000269|PubMed:20639862, ECO:0000269|PubMed:21451524, ECO:0000269|PubMed:21490601, ECO:0000269|PubMed:21496894, ECO:0000269|PubMed:21514197, ECO:0000269|PubMed:21778364, ECO:0000269|PubMed:23352454, ECO:0000269|PubMed:25284789}.(Source UnitProtKB).

Full Name

tet methylcytosine dioxygenase 1

Source UniprotKB

Species

Mus musculus [tax_id: 10090]

Genome

mm10

ReMap Statistics

Datasets
11
Biotypes
3
Peaks
336,842
Non-redundant peaks
183,928

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
52463
Official Gene Name
Tet1
JASPAR
MGI
MGI:1098693
Ensembl
ENSMUSG00000047146
UniProt
Q3URK3
Genevisible
Q3URK3
RefSeq
NM_001253857
Aliases
2510010B09Rik; BB001228; Cxxc6; D10Ertd17e
All peaks TET1
Download BED file
Non redundant peaks TET1
Download BED file
SEQUENCES TET1
Download FASTA file
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Datasets Table for TET1

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
TET1 trophoblast-stem-cell TS-Rs26 GEO Mus musculus GSE109545 448
TET1 mESC GEO Mus musculus GSE28532 11,293
TET1 mESC Tet1-N_shScr GEO Mus musculus GSE24841 39,709
TET1 mESC Tet1-N_shTet1 GEO Mus musculus GSE24841 278
TET1 mESC Tet1-C_shScr GEO Mus musculus GSE24841 62,414
TET1 mESC SALL4-het GEO Mus musculus GSE57700 64,127
TET1 mESC control-KD GEO Mus musculus GSE26832 4,613
TET1 embryonic-carcinoma RA GEO Mus musculus GSE33067 79,022
TET1 embryonic-carcinoma GEO Mus musculus GSE33067 23,862
TET1 mESC SALL4-KO GEO Mus musculus GSE57700 50,851
TET1 mESC CXXC_mut2 GEO Mus musculus GSE28532 225
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks