Tbp

Information Tbp

Description

The gene TATA binding protein is referred to in FlyBase by the symbol DmelTbp (CG9874, FBgn0003687). It is a protein_coding_gene from Dmel. It has one annotated transcript and one polypeptide. Gene sequence location is 2R:21686192..21687642. Its molecular function is described by 9 unique terms, many of which group under: transcription regulator activity; general transcription initiation factor activity; molecular function regulator; protein binding; nucleic acid binding. It is involved in the biological process described with 9 unique terms, many of which group under: mRNA transcription; tRNA transcription by RNA polymerase III; cellular component organization or biogenesis; RNA polymerase II preinitiation complex assembly; tRNA transcription. 21 alleles are reported. The phenotypes of these alleles manifest in: eye; adult brain; rhabdomere. The phenotypic classes of alleles include: visible; locomotor behavior defective; lethal - all die before end of first instar larval stage; some die during first instar larval stage; neuroanatomy defective; short lived. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages.

Full Name

TATA binding protein

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
5
Biotypes
2
Peaks
37,099
Non-redundant peaks
24,652

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
37476
Official Gene Name
Tbp
JASPAR
Ensembl
FBgn0003687
UniProt
P20227
Genevisible
P20227
RefSeq
NM_079081
Aliases
Tbp
All peaks Tbp
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Non redundant peaks Tbp
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SEQUENCES Tbp
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Datasets Table for Tbp

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
Tbp adult whole-fly_insertion ENCODE Drosophila melanogaster ENCSR599DVZ 13,778
Tbp embryo pre-MBT GEO Drosophila melanogaster GSE41700 181
Tbp embryo 2h-4h_ab-517_homemade GEO Drosophila melanogaster GSE52029 12,447
Tbp embryo 2h-4h_ab-518_homemade GEO Drosophila melanogaster GSE52029 6,402
Tbp embryo MBT GEO Drosophila melanogaster GSE41700 4,291
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks