VDR

Information VDR

Description

This gene encodes vitamin D3 receptor, which is a member of the nuclear hormone receptor superfamily of ligand-inducible transcription factors. This receptor also functions as a receptor for the secondary bile acid, lithocholic acid. Downstream targets of vitamin D3 receptor are principally involved in mineral metabolism, though this receptor regulates a variety of other metabolic pathways, such as those involved in immune response and cancer. Mutations in this gene are associated with type II vitamin D-resistant rickets. A single nucleotide polymorphism in the initiation codon results in an alternate translation start site three codons downstream. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. A recent study provided evidence for translational readthrough in this gene, and expression of an additional C-terminally extended isoform via the use of an alternative in-frame translation termination codon. [provided by RefSeq, Jun 2018]

Full Name

vitamin D receptor

Source NCBI

Species

Homo sapiens [tax_id: 9606]

Genome

hg38

ReMap Statistics

Datasets
19
Biotypes
8
Peaks
181,673
Non-redundant peaks
122,710

TF Classification

Super Class
Zinc-coordinating DNA-binding domains
Class
Nuclear receptors with C4 zinc fingers
Familly
Thyroid hormone receptor-related factors (NR1)
Sub Familly
Vitamin D receptor (NR1I)

Source TFClass

External IDs

NCBI Gene
7421
Official Gene Name
VDR
JASPAR
MA0693
Ensembl
ENSG00000111424
UniProt
P11473
Genevisible
P11473
RefSeq
NM_000376
Aliases
NR1I1; PPP1R163
All peaks VDR
Download BED file
Non redundant peaks VDR
Download BED file
SEQUENCES VDR
Download FASTA file
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Datasets Table for VDR

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
VDR RWPE-1 treated GEO Homo sapiens GSE116843 200
VDR LX2 CALCIPOTRIOL GEO Homo sapiens GSE38103 2,065
VDR LX2 GEO Homo sapiens GSE38103 2,449
VDR LX2 CALCIPOTRIOL_TGFB1 GEO Homo sapiens GSE38103 28,591
VDR THP-1 1d_1-25-OH-2D3 GEO Homo sapiens GSE89431 57,018
VDR THP-1 EtOH_1d GEO Homo sapiens GSE89431 8,670
VDR THP-1 2h_1-25-OH-2D3 GEO Homo sapiens GSE89431 3,719
VDR THP-1 EtOH_2h GEO Homo sapiens GSE89431 1,306
VDR THP-1 GEO Homo sapiens GSE53041 316
VDR THP-1 CAL GEO Homo sapiens GSE53041 1,039
VDR THP-1 2H_125D GEO Homo sapiens GSE51181 249
VDR THP-1 1H_125D GEO Homo sapiens GSE51181 170
VDR LCLGM10861 CALCITRIOL GEO Homo sapiens GSE22484 5,974
VDR LNCaP GEO Homo sapiens GSE64656 21,300
VDR LS180 125 GEO Homo sapiens GSE31939 6,127
VDR LS180 GEO Homo sapiens GSE31939 1,173
VDR primary-prostate-epithelial-cell GEO Homo sapiens GSE124576 6,026
VDR primary-prostate-epithelial-cell ethanol GEO Homo sapiens GSE124576 1,364
VDR kidney-cortex GEO Homo sapiens GSE129585 33,917
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks