bcd

Information bcd

Description

The gene bicoid is referred to in FlyBase by the symbol Dmelcd (CG1034, FBgn0000166). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (all unique). Gene sequence location is 3R:6755842..6759466. Its molecular function is described by 6 unique terms, many of which group under: binding; molecular function regulator; DNA-binding transcription factor activity; transcription regulator activity; nucleic acid binding. It is involved in the biological process described with 11 unique terms, many of which group under: negative regulation of protein metabolic process; cell surface receptor signaling pathway; cellular response to stimulus; multi-organism reproductive process; oogenesis. 224 alleles are reported. The phenotypes of these alleles manifest in: filzkorper; abdominal 5 ventral denticle belt; embryonic gnathal segment; gland; non-connected developing system. The phenotypic classes of alleles include: increased mortality during development; increased mortality; sterile; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages.

Full Name

bicoid

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
8
Biotypes
2
Peaks
102,460
Non-redundant peaks
47,275

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
40830
Official Gene Name
bcd
JASPAR
Ensembl
FBgn0000166
UniProt
P09081
Genevisible
P09081
RefSeq
NM_176411
Aliases
bcd
All peaks bcd
Download BED file
Non redundant peaks bcd
Download BED file
SEQUENCES bcd
Download FASTA file
DOWNLOAD All ReMap
Got to catalogue

Datasets Table for bcd

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
bcd adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR167BID 24,991
bcd embryo stage-3-5 GEO Drosophila melanogaster GSE103695 2,546
bcd embryo blastoderm GEO Drosophila melanogaster GSE50771 350
bcd embryo bcd-ubcd GEO Drosophila melanogaster GSE86966 11,194
bcd embryo GFP-bcd GEO Drosophila melanogaster GSE86966 14,155
bcd embryo mtrm-ubcd GEO Drosophila melanogaster GSE86966 14,379
bcd embryo bcd085 GEO Drosophila melanogaster GSE86966 15,643
bcd embryo tub-ubcd GEO Drosophila melanogaster GSE86966 19,202
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks