bcd
Information bcd
- Description
The gene bicoid is referred to in FlyBase by the symbol Dmelcd (CG1034, FBgn0000166). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (all unique). Gene sequence location is 3R:6755842..6759466. Its molecular function is described by 6 unique terms, many of which group under: binding; molecular function regulator; DNA-binding transcription factor activity; transcription regulator activity; nucleic acid binding. It is involved in the biological process described with 11 unique terms, many of which group under: negative regulation of protein metabolic process; cell surface receptor signaling pathway; cellular response to stimulus; multi-organism reproductive process; oogenesis. 224 alleles are reported. The phenotypes of these alleles manifest in: filzkorper; abdominal 5 ventral denticle belt; embryonic gnathal segment; gland; non-connected developing system. The phenotypic classes of alleles include: increased mortality during development; increased mortality; sterile; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages.
- Full Name
bicoid
Source FlyBase
- Species
Drosophila melanogaster [tax_id: 7227]
- Genome
dm6
ReMap Statistics
- Datasets
- 8
- Biotypes
- 2
- Peaks
- 102,460
- Non-redundant peaks
- 47,275
TF Classification
- Familly
- NA
- Sub Familly
- NA
Source JASPAR
Datasets Table for bcd
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
bcd | adult | whole-fly_site-specific-recombination_insertion | ENCODE | Drosophila melanogaster | ENCSR167BID | 24,991 | ||
bcd | embryo | stage-3-5 | GEO | Drosophila melanogaster | GSE103695 | 2,546 | ||
bcd | embryo | blastoderm | GEO | Drosophila melanogaster | GSE50771 | 350 | ||
bcd | embryo | bcd-ubcd | GEO | Drosophila melanogaster | GSE86966 | 11,194 | ||
bcd | embryo | GFP-bcd | GEO | Drosophila melanogaster | GSE86966 | 14,155 | ||
bcd | embryo | mtrm-ubcd | GEO | Drosophila melanogaster | GSE86966 | 14,379 | ||
bcd | embryo | bcd085 | GEO | Drosophila melanogaster | GSE86966 | 15,643 | ||
bcd | embryo | tub-ubcd | GEO | Drosophila melanogaster | GSE86966 | 19,202 | ||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |