cad

Information cad

Description

The gene caudal is referred to in FlyBase by the symbol Dmelcad (CG1759, FBgn0000251). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:20770731..20783135. Its molecular function is described by: RNA polymerase II transcription regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity. It is involved in the biological process described with 17 unique terms, many of which group under: genital disc development; gastrulation with mouth forming first; digestive system development; embryonic pattern specification; tube development. 34 alleles are reported. The phenotypes of these alleles manifest in: excretory system; adult external head; developing material anatomical entity; melanotic mass; head capsule. The phenotypic classes of alleles include: increased mortality; short lived; phenotype; visible. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages.

Full Name

caudal

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
5
Biotypes
3
Peaks
33,873
Non-redundant peaks
27,371

TF Classification

Familly
Homeo domain factors
Sub Familly
HOX-related factors

Source JASPAR

External IDs

NCBI Gene
35341
Official Gene Name
cad
JASPAR
MA0216.2
Ensembl
FBgn0000251
UniProt
P09085
Genevisible
P09085
RefSeq
NM_134301
Aliases
cad
All peaks cad
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Non redundant peaks cad
Download BED file
SEQUENCES cad
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Datasets Table for cad

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
cad adult whole-fly_insertion ENCODE Drosophila melanogaster ENCSR004VNY 14,971
cad embryo 0h-8h GEO Drosophila melanogaster GSE20000 10,024
cad embryo GEO Drosophila melanogaster GSE20000 2,654
cad embryo 0h-4h GEO Drosophila melanogaster GSE20000 4,795
cad third-instar GEO Drosophila melanogaster GSE20000 1,429
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks