cic

Information cic

Description

The gene capicua is referred to in FlyBase by the symbol Dmelcic (CG43122, FBgn0262582). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (all unique). Gene sequence location is 3R:20252770..20303942. Its molecular function is described by: sequence-specific DNA binding; DNA-binding transcription repressor activity, RNA polymerase II-specific; repressing transcription factor binding; RNA polymerase II transcription regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 14 unique terms, many of which group under: eye development; appendage morphogenesis; dorsal appendage formation; negative regulation of organ growth; post-embryonic development. 82 alleles are reported. The phenotypes of these alleles manifest in: gut; chorionic specialization; external encapsulating structure; tracheal system; male genitalia. The phenotypic classes of alleles include: embryonic/larval segmentation phenotype; phenotype; increased mortality during development; increased mortality.

Full Name

capicua

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
9
Biotypes
2
Peaks
44,047
Non-redundant peaks
25,022

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
53560
Official Gene Name
cic
JASPAR
Ensembl
FBgn0262582
UniProt
Q9U1H0
Genevisible
Q9U1H0
RefSeq
NM_080253
Aliases
cic
All peaks cic
Download BED file
Non redundant peaks cic
Download BED file
SEQUENCES cic
Download FASTA file
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Datasets Table for cic

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
cic adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR073PHL 18,147
cic embryo OptoSOS_30min GEO Drosophila melanogaster GSE130584 3,201
cic embryo 2h-4h_toll10b GEO Drosophila melanogaster GSE104839 799
cic embryo TorD GEO Drosophila melanogaster GSE130584 4,448
cic embryo 2h-4h_gd7 GEO Drosophila melanogaster GSE104839 2,552
cic embryo early-nuclear-cycle-14 GEO Drosophila melanogaster GSE130584 2,335
cic embryo OptoSOS_NoLight GEO Drosophila melanogaster GSE130584 3,903
cic embryo OptoSOS_1min GEO Drosophila melanogaster GSE130584 5,253
cic embryo OptoSOS_5min GEO Drosophila melanogaster GSE130584 3,409
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks