prd

Information prd

Description

The gene paired is referred to in FlyBase by the symbol Dmelprd (CG6716, FBgn0003145). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (all unique). Gene sequence location is 2L:12082995..12085827. Its molecular function is described by: DNA binding; RNA polymerase II transcription regulatory region sequence-specific DNA binding; RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with: regulation of transcription by RNA polymerase II; positive regulation of transcription by RNA polymerase II; periodic partitioning by pair rule gene; regulation of transcription, DNA-templated; anatomical structure development. 60 alleles are reported. The phenotypes of these alleles manifest in: embryo; male accessory gland secondary cell; compound cell cluster organ; adult external thorax; antenna. The phenotypic classes of alleles include: phenotype; decreased cell number; wild-type; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of no expression detected. Peak expression observed within 00-06 hour embryonic stages, in adult male stages.

Full Name

paired

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
2
Biotypes
1
Peaks
20,319
Non-redundant peaks
16,778

TF Classification

Familly
Paired box factors
Sub Familly

Source JASPAR

External IDs

NCBI Gene
34629
Official Gene Name
prd
JASPAR
MA0239.1
Ensembl
FBgn0003145
UniProt
P06601
Genevisible
P06601
RefSeq
NM_164990
Aliases
prd
All peaks prd
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Non redundant peaks prd
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SEQUENCES prd
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Datasets Table for prd

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
prd adult whole-fly ENCODE Drosophila melanogaster ENCSR521GRU 10,666
prd adult whole-fly ENCODE Drosophila melanogaster ENCSR271OGF 9,653
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks