scrt

Information scrt

Description

The gene scratch is referred to in FlyBase by the symbol Dmelscrt (CG1130, FBgn0004880). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3L:3983896..3994003. Its molecular function is described by: DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding. It is involved in the biological process described with: negative regulation of transcription by RNA polymerase II; regulation of transcription by RNA polymerase II. 22 alleles are reported. The phenotypes of these alleles manifest in: somatic cell; posterior crossvein; macrochaeta; pigment cell; cell. The phenotypic classes of alleles include: some die during pupal stage; visible; partially lethal; behavior defective; lethal - all die before end of pupal stage; uncoordinated. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 06-18 hour embryonic stages.

Full Name

scratch

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
1
Biotypes
1
Peaks
29,767
Non-redundant peaks
29,767

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
38469
Official Gene Name
scrt
JASPAR
Ensembl
FBgn0004880
UniProt
Genevisible
RefSeq
NM_079187
Aliases
scrt
All peaks scrt
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Non redundant peaks scrt
Download BED file
SEQUENCES scrt
Download FASTA file
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Datasets Table for scrt

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
scrt adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR658VWK 29,767
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks