scrt
Information scrt
- Description
The gene scratch is referred to in FlyBase by the symbol Dmelscrt (CG1130, FBgn0004880). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3L:3983896..3994003. Its molecular function is described by: DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding. It is involved in the biological process described with: negative regulation of transcription by RNA polymerase II; regulation of transcription by RNA polymerase II. 22 alleles are reported. The phenotypes of these alleles manifest in: somatic cell; posterior crossvein; macrochaeta; pigment cell; cell. The phenotypic classes of alleles include: some die during pupal stage; visible; partially lethal; behavior defective; lethal - all die before end of pupal stage; uncoordinated. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 06-18 hour embryonic stages.
- Full Name
scratch
Source FlyBase
- Species
Drosophila melanogaster [tax_id: 7227]
- Genome
dm6
ReMap Statistics
- Datasets
- 1
- Biotypes
- 1
- Peaks
- 29,767
- Non-redundant peaks
- 29,767
TF Classification
- Familly
- NA
- Sub Familly
- NA
Source JASPAR
External IDs
- NCBI Gene
- 38469
- Official Gene Name
- scrt
- JASPAR
- Ensembl
- FBgn0004880
- UniProt
- Genevisible
- RefSeq
- NM_079187
- Aliases
- scrt
Datasets Table for scrt
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |
---|---|---|---|---|---|---|---|---|
scrt | adult | whole-fly_site-specific-recombination_insertion | ENCODE | Drosophila melanogaster | ENCSR658VWK | 29,767 | ||
Target name | Target modification | Ecotype/Strain | Biotype | Biotype modification | Source | Species | Experiment | Peaks |