sd

Information sd

Description

The gene scalloped is referred to in FlyBase by the symbol Dmelsd (CG8544, FBgn0003345). It is a protein_coding_gene from Dmel. It has 22 annotated transcripts and 22 polypeptides (7 unique). Gene sequence location is X:15804370..15827682. Its molecular function is described by 7 unique terms, many of which group under: binding; protein binding; nucleic acid binding; transcription cofactor binding; transcription factor binding. It is involved in the biological process described with 15 unique terms, many of which group under: hippo signaling; compound eye morphogenesis; embryonic organ development; leg disc morphogenesis; regulation of multicellular organismal development. 221 alleles are reported. The phenotypes of these alleles manifest in: non-connected developing system; female reproductive system; Kenyon cell; ganglion mother cell; unguis. The phenotypic classes of alleles include: phenotype; some die during pupal stage; fertile; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 06-18 hour embryonic stages.

Full Name

scalloped

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
2
Biotypes
2
Peaks
37,107
Non-redundant peaks
34,819

TF Classification

Familly
TEA domain factors
Sub Familly

Source JASPAR

External IDs

NCBI Gene
32536
Official Gene Name
sd
JASPAR
MA0243.1
Ensembl
FBgn0003345
UniProt
P30052
Genevisible
P30052
RefSeq
NM_206727
Aliases
CG8544; DROEXO; DROEXO2; DmelCG8544; EP(X)1088; EP1088; SD; Sd; TEAD; anon-EST:Liang-2.14; clone 2.14; l(1)G0239; l(1)G0262; l(1)G0309; l(1)G0315; l(1)G0483; l(1)HF394; l(1)III; sd; sp
All peaks sd
Download BED file
Non redundant peaks sd
Download BED file
SEQUENCES sd
Download FASTA file
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Datasets Table for sd

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
sd adult whole-fly_site-specific-recombination_insertion ENCODE Drosophila melanogaster ENCSR591PRH 32,934
sd third-instar eye-disk GEO Drosophila melanogaster GSE54601 4,173
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks