trr

Information trr

Description

The gene trithorax-related is referred to in FlyBase by the symbol Dmel rr (CG3848, FBgn0023518). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (all unique). Gene sequence location is X:1881313..1889950. Its molecular function is described by 6 unique terms, many of which group under: binding; protein binding; sequence-specific double-stranded DNA binding; histone binding; transcription coregulator activity. It is involved in the biological process described with 8 unique terms, many of which group under: organelle organization; macromolecule methylation; protein metabolic process; protein alkylation; anatomical structure development. 25 alleles are reported. The phenotypes of these alleles manifest in: morphogenetic furrow; intracellular anatomical structure; cell component; dorsal thoracic disc; visual system neuron. The phenotypic classes of alleles include: phenotype; fertile; increased mortality; increased mortality during development. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages.

Full Name

trithorax-related

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
6
Biotypes
2
Peaks
64,082
Non-redundant peaks
27,962

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
31149
Official Gene Name
trr
JASPAR
Ensembl
FBgn0023518
UniProt
Q8IRW8
Genevisible
Q8IRW8
RefSeq
NM_166911
Aliases
CG3848; DmelCG3848; EG:63B12.3; TRR; Trr; anon-2Bb; trr
All peaks trr
Download BED file
Non redundant peaks trr
Download BED file
SEQUENCES trr
Download FASTA file
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Datasets Table for trr

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
trr Schneider-2 WT GEO Drosophila melanogaster GSE41440 6,711
trr Schneider-2 homemade GEO Drosophila melanogaster GSE81795 5,584
trr adult 0-5d_head GEO Drosophila melanogaster GSE89459 9,341
trr adult 2-4d_brain_yf_homemade GEO Drosophila melanogaster GSE95781 17,176
trr adult 2-4d_brain_ca GEO Drosophila melanogaster GSE95781 16,450
trr adult brain_WT_homemade GEO Drosophila melanogaster GSE95781 8,820
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks