usp

Information usp

Description

The gene ultraspiracle is referred to in FlyBase by the symbol Dmelusp (CG4380, FBgn0003964). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is X:2038798..2042311. Its molecular function is described by 12 unique terms, many of which group under: binding; protein binding; lipid binding; DNA-binding transcription factor activity, RNA polymerase II-specific; signaling receptor activity. It is involved in the biological process described with 20 unique terms, many of which group under: response to nutrient levels; organ growth; metamorphosis; brain development; cellular response to ecdysone. 40 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane bounded cell projection; female organism; cell projection; neuron projection; terminal filament. The phenotypic classes of alleles include: size defective; lethal; phenotype; increased mortality during development. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages.

Full Name

ultraspiracle

Source FlyBase

Species

Drosophila melanogaster [tax_id: 7227]

Genome

dm6

ReMap Statistics

Datasets
7
Biotypes
2
Peaks
55,907
Non-redundant peaks
36,638

TF Classification

Familly
NA
Sub Familly
NA

Source JASPAR

External IDs

NCBI Gene
31165
Official Gene Name
usp
JASPAR
Ensembl
FBgn0003964
UniProt
P20153
Genevisible
P20153
RefSeq
NM_057433
Aliases
2C; CF1; CF1/USP; CF1/Usp; CG4380; Cf1; DmUSP; DmUsp; DmelCG4380; EG:22E5.1; NR2B4; USP; Usp; XR2C; cf1; dUSP; dmUSP; l(1)2Cf; l(1)usp; usp
All peaks usp
Download BED file
Non redundant peaks usp
Download BED file
SEQUENCES usp
Download FASTA file
DOWNLOAD All ReMap
Got to catalogue

Datasets Table for usp

Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks
usp Schneider-2 GEO Drosophila melanogaster GSE139316 7,590
usp Schneider-2 BioID2 GEO Drosophila melanogaster GSE139316 4,791
usp Schneider-2 APEX2 GEO Drosophila melanogaster GSE139316 376
usp adult whole-fly_insertion ENCODE Drosophila melanogaster ENCSR711BGO 7,059
usp adult whole-fly_insertion ENCODE Drosophila melanogaster ENCSR998ZQZ 4,703
usp adult whole-fly_insertion ENCODE Drosophila melanogaster ENCSR836VAV 26,939
usp adult whole-fly_insertion ENCODE Drosophila melanogaster ENCSR303MJE 4,449
Target name Target modification Ecotype/Strain Biotype Biotype modification Source Species Experiment Peaks